SRR2936390.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936390.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	104201
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCG	456	0.4376157618448959	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGC	394	0.3781153731730022	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTC	342	0.32821182138367194	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	306	0.2936632086064433	No Hit
GCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTGC	172	0.16506559438009233	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCG	126	0.12092014472030019	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCT	108	0.10364583833168588	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATGGTC	20	7.0037605E-4	45.000004	12
GTACAAG	20	7.0037605E-4	45.000004	1
GAATCGG	20	7.0037605E-4	45.000004	2
GCGTTAG	20	7.0037605E-4	45.000004	1
CAGGGCG	20	7.0037605E-4	45.000004	5
CGTTTTA	20	7.0037605E-4	45.000004	1
CGATATG	30	2.146484E-6	45.000004	10
GAGGGCG	30	2.146484E-6	45.000004	5
AATAAGG	20	7.0037605E-4	45.000004	3
ACGAAGA	30	2.146484E-6	45.000004	33
CTATCTC	25	3.8663526E-5	45.0	5
GCGATAT	35	1.1977681E-7	45.0	9
CTTCTGC	50	2.1827873E-11	45.0	45
GCCACCG	25	3.8663526E-5	45.0	9
CTAGGAC	25	3.8663526E-5	45.0	5
ACGGCTG	60	3.6379788E-12	41.250004	8
GGCGATA	55	6.002665E-11	40.909092	8
TACGGCT	50	1.0622898E-9	40.5	7
ATGGGAC	80	0.0	39.375004	5
GAATGAC	40	3.4180266E-7	39.375004	1