SRR2936389.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936389.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	132157
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCG	517	0.3912013741232019	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTC	499	0.37758121022722974	No Hit
GCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC	426	0.3223438788713424	TruSeq Adapter, Index 19 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGC	374	0.2829967387274227	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	352	0.26634987174345665	No Hit
TCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC	242	0.18311553682362644	TruSeq Adapter, Index 19 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGCT	240	0.18160218527962954	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC	239	0.1808455095076311	TruSeq Adapter, Index 19 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCT	141	0.10669128385178235	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACTTA	45	3.8016879E-10	45.000004	5
TTAGGCG	20	7.0106203E-4	45.0	5
TTGGCCG	25	3.8720304E-5	45.0	36
GCGACGT	25	3.8720304E-5	45.0	17
CTCGTCC	25	3.8720304E-5	45.0	37
CGACGTC	25	3.8720304E-5	45.0	18
GGCCGCC	25	3.8720304E-5	45.0	38
GTCTCAC	20	7.0106203E-4	45.0	22
GTAGGGT	25	3.8720304E-5	45.0	4
AGGGTAC	25	3.8720304E-5	45.0	6
CATTCTA	25	3.8720304E-5	45.0	45
CAACAAG	20	7.0106203E-4	45.0	2
AAGCGAC	25	3.8720304E-5	45.0	15
CCTCGTC	25	3.8720304E-5	45.0	36
GCGTTAG	20	7.0106203E-4	45.0	1
TGGCCGC	25	3.8720304E-5	45.0	37
CGAGGGT	20	7.0106203E-4	45.0	4
TCGTCCC	25	3.8720304E-5	45.0	38
ACAGCGG	20	7.0106203E-4	45.0	2
AGCGACG	25	3.8720304E-5	45.0	16