SRR2936387.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936387.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	223941
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1831	0.8176260711526696	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	327	0.14602060364113761	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGAT	20	7.021109E-4	45.000004	4
CGACAAT	20	7.021109E-4	45.000004	20
AAACGCG	20	7.021109E-4	45.000004	1
GCGATCA	20	7.021109E-4	45.000004	9
GCGATAT	20	7.021109E-4	45.000004	9
GCGATAG	40	6.7720975E-9	45.000004	9
TTACGAG	20	7.021109E-4	45.000004	1
GGCGCTA	20	7.021109E-4	45.000004	1
TGCAACG	20	7.021109E-4	45.000004	2
CTACGAA	25	3.8807164E-5	45.0	11
AAGGGCG	70	0.0	45.0	5
GCTACGA	25	3.8807164E-5	45.0	10
CGTTTTA	105	0.0	42.857143	1
CGTTTTT	805	0.0	42.20497	1
GGCGATA	80	0.0	42.187504	8
CGGTTTT	100	0.0	40.5	1
GTAAGGA	90	0.0	40.0	4
CGCATGG	40	3.441619E-7	39.375004	2
TAACGGG	75	0.0	39.0	3
CGGGAAT	75	0.0	39.0	6