SRR2936386.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936386.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	258620
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3273	1.2655633748356663	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	565	0.21846724924599797	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	422	0.16317376846338255	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	316	0.12218699249864666	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATAC	20	7.023136E-4	45.000004	16
CCGCGGT	20	7.023136E-4	45.000004	11
CGGTCAT	20	7.023136E-4	45.000004	14
TAGGACA	20	7.023136E-4	45.000004	6
AATACGG	20	7.023136E-4	45.000004	2
CGGTTTA	25	3.882395E-5	45.0	1
CGGTCTA	50	2.1827873E-11	45.0	31
CGTTTTT	1205	0.0	42.94606	1
GCTACGA	70	0.0	41.785713	10
CGACGGT	55	6.002665E-11	40.909092	28
GGACCGA	145	0.0	40.344826	8
AGGCGAT	95	0.0	40.26316	7
ATCTACC	45	1.9183062E-8	40.0	15
GACCGAT	135	0.0	40.0	9
CGTTTTA	205	0.0	39.512196	1
TATTGCG	40	3.4443838E-7	39.375004	1
GTTACGG	40	3.4443838E-7	39.375004	2
GGCGATA	40	3.4443838E-7	39.375004	8
TACGAAT	75	0.0	39.0	12
CATGCGG	35	6.2295276E-6	38.571426	2