SRR2936383.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936383.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	151917
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1495	0.9840899965112528	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCG	751	0.4943488878795658	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTC	738	0.4857915835620767	RNA PCR Primer, Index 4 (95% over 23bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGC	685	0.4509041121138517	No Hit
GCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGC	325	0.21393260793722887	RNA PCR Primer, Index 48 (96% over 25bp)
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	259	0.1704878321715147	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	212	0.13954988579290006	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	174	0.11453622701870099	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCT	172	0.11321971866216421	TruSeq Adapter, Index 4 (95% over 21bp)
GAATGAAACCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCG	160	0.10532066852294344	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGC	157	0.10334590598813827	No Hit
CCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGC	152	0.10005463509679627	RNA PCR Primer, Index 4 (96% over 26bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCCC	30	2.153036E-6	45.000004	35
CGACGGT	30	2.153036E-6	45.000004	28
CGGTTTT	65	0.0	45.000004	1
GGACTGA	30	2.153036E-6	45.000004	8
TTCCGCC	30	2.153036E-6	45.000004	34
TTTCCGC	30	2.153036E-6	45.000004	33
CCCAAGC	30	2.153036E-6	45.000004	39
GACGGTC	30	2.153036E-6	45.000004	29
TATACTG	30	2.153036E-6	45.000004	18
CCGCCCA	30	2.153036E-6	45.000004	36
CGCCCAA	30	2.153036E-6	45.000004	37
ATTTCCG	30	2.153036E-6	45.000004	32
ACGGTCT	30	2.153036E-6	45.000004	30
TCACGAC	35	1.202643E-7	45.0	25
CTTAAGC	20	7.013948E-4	45.0	25
CTCAACT	20	7.013948E-4	45.0	2
CCGATCA	20	7.013948E-4	45.0	11
GAACTGC	20	7.013948E-4	45.0	19
ACCGATC	20	7.013948E-4	45.0	10
GGATCCC	50	2.1827873E-11	45.0	8