SRR2936380.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936380.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	108848
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCG	781	0.7175143319123916	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGC	576	0.5291783036895487	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTC	526	0.483242687049831	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	338	0.3105247684844921	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	249	0.22875937086579448	Illumina Single End Adapter 1 (95% over 21bp)
GAATGAAACCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCG	198	0.18190504189328238	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	174	0.15985594590621785	Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCT	168	0.1543436719094517	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGC	167	0.15342495957665736	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	141	0.1295384389240041	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTT	133	0.12218874026164928	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCT	110	0.1010583566073791	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGG	20	7.005133E-4	45.0	3
CAGGTAT	20	7.005133E-4	45.0	30
TTAGGAA	20	7.005133E-4	45.0	5
ACGTTTT	20	7.005133E-4	45.0	29
CGACGGG	25	3.8674876E-5	45.0	3
GACGTTT	20	7.005133E-4	45.0	28
TTTCGAC	20	7.005133E-4	45.0	24
TATGGGC	25	3.8674876E-5	45.0	4
ACTCTTA	20	7.005133E-4	45.0	7
GGACTAA	55	1.8189894E-12	45.0	8
GGATCGT	20	7.005133E-4	45.0	8
GTTAGCG	20	7.005133E-4	45.0	1
GCCCTAC	40	6.717528E-9	45.0	26
CGGGAGC	25	3.8674876E-5	45.0	6
AAGGGTG	20	7.005133E-4	45.0	6
CTTTCGA	20	7.005133E-4	45.0	23
TCTTTCG	20	7.005133E-4	45.0	22
GGCGATT	35	1.198423E-7	45.0	8
AGTAGGC	20	7.005133E-4	45.0	18
TCGACGT	20	7.005133E-4	45.0	26