##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936380.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 108848 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.85980449801558 31.0 31.0 34.0 30.0 34.0 2 31.99124467146847 33.0 31.0 34.0 30.0 34.0 3 31.826106129648686 33.0 31.0 34.0 30.0 34.0 4 35.63121968249302 37.0 35.0 37.0 33.0 37.0 5 35.73137770101426 37.0 35.0 37.0 35.0 37.0 6 35.727316992503305 37.0 35.0 37.0 35.0 37.0 7 26.983582610612967 35.0 16.0 37.0 0.0 37.0 8 31.248667867117447 35.0 23.0 37.0 17.0 37.0 9 35.981607379097454 39.0 32.0 39.0 32.0 39.0 10 36.59957004262825 37.0 35.0 39.0 32.0 39.0 11 37.000440981919745 39.0 37.0 39.0 34.0 39.0 12 37.09154968396296 39.0 37.0 39.0 34.0 39.0 13 37.037501837424664 39.0 37.0 39.0 33.0 39.0 14 38.18877701014259 40.0 37.0 41.0 33.0 41.0 15 38.24959576657357 40.0 37.0 41.0 33.0 41.0 16 38.19438115537263 40.0 37.0 41.0 34.0 41.0 17 38.09015324121711 40.0 37.0 41.0 33.0 41.0 18 38.00895744524475 40.0 37.0 41.0 33.0 41.0 19 37.87782963398501 40.0 37.0 41.0 33.0 41.0 20 37.98479531089225 40.0 37.0 41.0 34.0 41.0 21 37.95742687049831 40.0 37.0 41.0 33.0 41.0 22 37.978263266206085 40.0 37.0 41.0 33.0 41.0 23 37.94303983536675 40.0 37.0 41.0 33.0 41.0 24 37.91248346317801 40.0 36.0 41.0 33.0 41.0 25 37.847401881522856 40.0 36.0 41.0 33.0 41.0 26 37.722218139056295 39.0 36.0 41.0 33.0 41.0 27 37.645340291048065 39.0 36.0 41.0 33.0 41.0 28 37.656668014111425 40.0 36.0 41.0 33.0 41.0 29 37.634380052917834 40.0 36.0 41.0 33.0 41.0 30 37.600415257974426 40.0 36.0 41.0 33.0 41.0 31 37.46819417903866 39.0 36.0 41.0 33.0 41.0 32 37.35126966044392 39.0 36.0 41.0 33.0 41.0 33 37.260794869910335 39.0 36.0 41.0 32.0 41.0 34 37.081159047479055 39.0 35.0 41.0 31.0 41.0 35 37.02055159488461 39.0 35.0 41.0 31.0 41.0 36 36.84296450095546 39.0 35.0 41.0 31.0 41.0 37 36.69927789210642 39.0 35.0 41.0 30.0 41.0 38 36.62908826988094 39.0 35.0 40.0 30.0 41.0 39 36.561902836983684 39.0 35.0 40.0 30.0 41.0 40 36.365280023519034 39.0 35.0 40.0 30.0 41.0 41 36.3427807584889 39.0 35.0 40.0 30.0 41.0 42 36.24410186682346 39.0 35.0 40.0 30.0 41.0 43 36.18574525944436 39.0 35.0 40.0 30.0 41.0 44 35.94861641922681 38.0 35.0 40.0 29.0 41.0 45 35.88970858444804 38.0 35.0 40.0 29.0 41.0 46 35.75514478906365 38.0 35.0 40.0 28.0 41.0 47 35.540607085109514 38.0 35.0 40.0 27.0 41.0 48 35.429626635307955 38.0 34.0 40.0 26.0 41.0 49 35.21625569601646 38.0 34.0 40.0 26.0 41.0 50 34.94789982360723 38.0 34.0 40.0 24.0 41.0 51 32.489839041599296 36.0 30.0 39.0 16.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 3.0 10 5.0 11 4.0 12 1.0 13 2.0 14 2.0 15 7.0 16 7.0 17 9.0 18 24.0 19 52.0 20 81.0 21 141.0 22 236.0 23 350.0 24 526.0 25 762.0 26 974.0 27 1237.0 28 1416.0 29 1678.0 30 2201.0 31 2737.0 32 3638.0 33 4846.0 34 7405.0 35 9774.0 36 10765.0 37 16502.0 38 20766.0 39 22689.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.409966191386154 22.346758782889903 29.677164486256064 10.566110539467882 2 29.461267088049393 27.989489930912832 26.740959870645302 15.808283110392473 3 28.853079523739527 27.08180214611201 28.876047332059386 15.189070998089077 4 26.17687049830957 26.149309128325736 30.38549169484051 17.28832867852418 5 25.46762457739233 29.666139938262532 26.562729678083198 18.303505806261946 6 24.69223136851389 35.507312950169045 25.61002498897545 14.190430692341613 7 61.91018668234602 26.82915625459356 7.593157430545347 3.6674996325150673 8 83.28862266647067 5.531566955754814 7.187086579450243 3.9927237983242687 9 77.13416874908128 7.591320005879759 8.447559900044098 6.826951344994855 10 32.40849625165369 40.28921064236366 15.164265765103629 12.138027340879024 11 25.992209319417903 26.76760252829634 29.569675143319124 17.670513008966633 12 26.850286638247834 22.87593708657945 31.71394972806115 18.55982654711157 13 22.58746141408202 27.378546229604588 32.69145965015434 17.342532706159048 14 19.395854769954433 31.25 29.067139497280614 20.287005732764957 15 16.989747170366016 27.496141408202263 37.19406879317948 18.320042628252242 16 19.35359400264589 28.21457445244745 31.421799206232542 21.010032338674115 17 19.193738056739672 26.717992062325447 30.072210789357634 24.016059091577247 18 20.404600911362632 26.739122445979714 32.707077759811845 20.149198882845802 19 20.161142143172132 29.597236513302956 28.786932235778334 21.45468910774658 20 21.423452888431573 29.04141555196237 30.78237542260767 18.752756136998382 21 21.151514037924446 29.62112303395561 30.596795531383215 18.630567396736733 22 20.241988828458034 25.840621784506833 28.87237248272821 25.045016904306923 23 17.184514184918417 29.466779362046157 30.34690577686315 23.001800676172277 24 19.96270027928855 26.913677789210645 31.451198000881963 21.672423930618844 25 17.52260032338674 31.913310304277527 28.62156401587535 21.942525356460386 26 17.148684403939438 30.308319858885785 29.8011906511833 22.741805085991473 27 18.60024988975452 30.027193885050714 30.75665147728943 20.615904747905336 28 16.601131853594005 28.10524768484492 33.32261502278406 21.97100543877701 29 18.28145671027488 25.031236219315005 33.99603116272233 22.691275907687785 30 19.16985153608702 27.616492723798324 32.28538879905924 20.92826694105542 31 21.99581067176246 29.09194473026606 27.877407026311925 21.034837571659562 32 21.75327061590475 28.868697633397026 28.88155960605615 20.49647214464207 33 21.349037189475233 27.38589592826694 27.851683080993677 23.41338380126415 34 20.546082610612963 27.337204174628837 30.051080405703367 22.06563280905483 35 19.899309128325736 25.960973100102898 31.04328972512127 23.096428046450097 36 23.779950022049096 25.697302660590914 29.97023372041746 20.552513596942525 37 19.828568278700573 28.170476260473322 33.245443186829334 18.755512273996764 38 21.65864324562693 27.646810230780538 28.062068205203587 22.632478318388944 39 21.051374393649862 27.483279435543146 29.84528884315743 21.620057327649565 40 21.98754226076731 26.64725121270028 29.345509334117303 22.019697192415112 41 21.617301190651183 28.108922534176102 27.753380861384684 22.520395413788037 42 23.342642951638982 24.882404821402325 30.63630016169337 21.138652065265322 43 23.666029692782594 24.893429369395857 29.557731882992798 21.88280905482875 44 20.82904600911363 26.04549463471998 29.250881963839483 23.874577392326916 45 19.600727620167575 26.511281787446716 28.707004262825226 25.18098632956049 46 23.414302513596944 27.834227546670586 28.249485521093636 20.501984418638834 47 19.82764956636778 26.35785682787006 32.6510363075114 21.16345729825077 48 21.830442451859476 24.96600764368661 30.754814052623843 22.448735851830076 49 21.404159929442894 23.417058650595326 32.11083345582831 23.06794796413347 50 20.49279729531089 24.499301778627075 31.17650301337645 23.83139791268558 51 20.552513596942525 24.376194326032632 28.410260179332646 26.661031897692194 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 56.0 1 105.0 2 154.0 3 405.0 4 656.0 5 465.0 6 274.0 7 261.0 8 248.0 9 252.5 10 257.0 11 265.0 12 273.0 13 317.5 14 362.0 15 333.5 16 305.0 17 316.0 18 327.0 19 325.5 20 324.0 21 366.5 22 409.0 23 473.5 24 538.0 25 674.0 26 1038.0 27 1266.0 28 1438.5 29 1611.0 30 1886.0 31 2161.0 32 2549.0 33 2937.0 34 3460.5 35 3984.0 36 4385.5 37 4787.0 38 5201.0 39 5615.0 40 6162.0 41 6709.0 42 7604.5 43 8500.0 44 9248.0 45 9996.0 46 12283.5 47 14571.0 48 13349.5 49 12128.0 50 11014.5 51 9901.0 52 8123.5 53 6346.0 54 5213.0 55 4080.0 56 3510.0 57 2940.0 58 2484.5 59 2029.0 60 1775.0 61 1521.0 62 1289.0 63 1057.0 64 896.0 65 735.0 66 598.0 67 461.0 68 356.0 69 251.0 70 177.0 71 103.0 72 94.5 73 86.0 74 63.0 75 31.0 76 22.0 77 13.5 78 5.0 79 5.0 80 5.0 81 5.0 82 5.0 83 2.5 84 0.0 85 0.5 86 1.0 87 1.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 108848.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.84808172864913 #Duplication Level Percentage of deduplicated Percentage of total 1 76.49568505769417 43.48632956048802 2 10.149002876628204 11.539026899897104 3 4.552506545137206 7.764037924445098 4 2.711787711302886 6.166397177715713 5 1.7679950871068877 5.025356460385124 6 1.1247939493842722 3.8365427017492286 7 0.8435954620382041 3.3569748640305748 8 0.6367368046801771 2.8957812729678083 9 0.4347263971039788 2.2242025576951345 >10 1.2476162771906008 9.693333823313244 >50 0.011312582824267106 0.4492503307364398 >100 0.019392999127315038 1.832831103924739 >500 0.0048482497818287595 1.7299353226517715 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCG 781 0.7175143319123916 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGC 576 0.5291783036895487 No Hit GAATCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTC 526 0.483242687049831 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 338 0.3105247684844921 No Hit GCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC 249 0.22875937086579448 Illumina Single End Adapter 1 (95% over 21bp) GAATGAAACCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCG 198 0.18190504189328238 No Hit CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC 174 0.15985594590621785 Illumina Single End Adapter 1 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCT 168 0.1543436719094517 No Hit GAATGAAACGGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGC 167 0.15342495957665736 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 141 0.1295384389240041 No Hit GAATCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTT 133 0.12218874026164928 No Hit GAACTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCT 110 0.1010583566073791 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.187123327943555E-4 0.0 0.0 0.12310745259444363 0.0 2 9.187123327943555E-4 0.0 0.0 0.9545421137733353 0.0 3 9.187123327943555E-4 0.0 0.0 1.2816037042481259 0.0 4 9.187123327943555E-4 0.0 0.0 1.7841393502866383 0.0 5 9.187123327943555E-4 0.0 0.0 3.53520505659268 0.0 6 9.187123327943555E-4 0.0 0.0 4.225158018521241 0.0 7 0.0027561369983830665 0.0 0.0 4.998713802734088 0.0 8 0.0027561369983830665 0.0 0.0 6.345546082610613 0.0 9 0.0027561369983830665 0.0 0.0 6.8196016463325 0.0 10 0.0027561369983830665 0.0 0.0 8.9519329707482 0.0 11 0.0027561369983830665 0.0 0.0 10.824268704983096 0.0 12 0.0027561369983830665 0.0 0.0 12.909745700426283 0.0 13 0.0027561369983830665 0.0 0.0 13.542738497721594 0.0 14 0.0027561369983830665 0.0 0.0 13.763229457592239 0.0 15 0.0027561369983830665 0.0 0.0 14.240959870645304 0.0 16 0.0027561369983830665 0.0 0.0 15.116492723798324 0.0 17 0.0027561369983830665 0.0 0.0 16.24007790680582 0.0 18 0.0027561369983830665 0.0 0.0 17.41051741878583 0.0 19 0.0027561369983830665 0.0 0.0 18.103226517712773 0.0 20 0.0027561369983830665 0.0 0.0 18.725194767014553 0.0 21 0.0027561369983830665 0.0 0.0 19.568572688519772 0.0 22 0.0027561369983830665 0.0 0.0 20.47350433632221 0.0 23 0.0027561369983830665 0.0 0.0 21.317800970160224 0.0 24 0.0027561369983830665 0.0 0.0 21.924151109804498 0.0 25 0.0027561369983830665 0.0 0.0 22.487321769807437 0.0 26 0.0027561369983830665 0.0 0.0 23.027524621490517 0.0 27 0.0027561369983830665 0.0 0.0 23.562215199176833 0.0 28 0.0027561369983830665 0.0 0.0 24.07853153020726 0.0 29 0.0027561369983830665 0.0 0.0 24.63251506688226 0.0 30 0.0027561369983830665 0.0 0.0 25.296744083492577 0.0 31 0.0027561369983830665 0.0 0.0 25.926980743789503 0.0 32 0.0027561369983830665 0.0 0.0 26.454321622813463 0.0 33 0.0027561369983830665 0.0 0.0 26.96604439217992 0.0 34 0.0027561369983830665 0.0 0.0 27.505328531530207 0.0 35 0.0027561369983830665 0.0 0.0 28.108003821843305 0.0 36 0.0027561369983830665 0.0 0.0 28.664743495516685 0.0 37 0.0027561369983830665 0.0 0.0 29.209539908863736 0.0 38 0.0027561369983830665 0.0 0.0 29.77546670586506 0.0 39 0.0027561369983830665 0.0 0.0 30.371711009848596 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGGG 20 7.005133E-4 45.0 3 CAGGTAT 20 7.005133E-4 45.0 30 TTAGGAA 20 7.005133E-4 45.0 5 ACGTTTT 20 7.005133E-4 45.0 29 CGACGGG 25 3.8674876E-5 45.0 3 GACGTTT 20 7.005133E-4 45.0 28 TTTCGAC 20 7.005133E-4 45.0 24 TATGGGC 25 3.8674876E-5 45.0 4 ACTCTTA 20 7.005133E-4 45.0 7 GGACTAA 55 1.8189894E-12 45.0 8 GGATCGT 20 7.005133E-4 45.0 8 GTTAGCG 20 7.005133E-4 45.0 1 GCCCTAC 40 6.717528E-9 45.0 26 CGGGAGC 25 3.8674876E-5 45.0 6 AAGGGTG 20 7.005133E-4 45.0 6 CTTTCGA 20 7.005133E-4 45.0 23 TCTTTCG 20 7.005133E-4 45.0 22 GGCGATT 35 1.198423E-7 45.0 8 AGTAGGC 20 7.005133E-4 45.0 18 TCGACGT 20 7.005133E-4 45.0 26 >>END_MODULE