SRR2936379.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936379.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	223093
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4740	2.124674463116279	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	830	0.37204215282415853	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	438	0.19633067823732706	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTCG	30	2.1576125E-6	45.000004	30
GTTAGCG	20	7.02105E-4	45.000004	1
CACGACG	40	6.7720975E-9	45.000004	26
TAACGAA	20	7.02105E-4	45.000004	1
CTGCGAC	20	7.02105E-4	45.000004	44
TGCGACA	20	7.02105E-4	45.000004	45
CGAGGGC	20	7.02105E-4	45.000004	4
GCGGGTA	20	7.02105E-4	45.000004	5
TCCGTGG	20	7.02105E-4	45.000004	36
CCGGTCG	30	2.1576125E-6	45.000004	16
CGCACGG	20	7.02105E-4	45.000004	2
TACACGG	20	7.02105E-4	45.000004	2
TAATCGT	20	7.02105E-4	45.000004	21
GCGGGCG	35	1.2060445E-7	45.0	5
CGTTTTA	420	0.0	43.92857	1
CGTTTTT	2040	0.0	43.89706	1
CGGTTTT	120	0.0	43.125004	1
ACAACGA	50	1.0732037E-9	40.5	13
CAACGAG	50	1.0732037E-9	40.5	14
GGATTAC	50	1.0732037E-9	40.5	8