SRR2936375.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936375.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	230171
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1850	0.8037502552450134	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCG	572	0.2485108897298096	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGC	540	0.23460818261205799	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTC	517	0.22461561187117404	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	300	0.1303378792289211	No Hit
GCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC	239	0.10383584378570715	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTAA	35	1.206281E-7	45.0	33
CGACGGT	35	1.206281E-7	45.0	28
CGAATAG	35	1.206281E-7	45.0	26
TCGTAAC	35	1.206281E-7	45.0	34
AGTAGCG	20	7.0215197E-4	45.0	1
TGTACGG	45	3.8198777E-10	45.0	2
TAAGCGG	20	7.0215197E-4	45.0	2
CGTTTTA	115	0.0	43.043476	1
CGTTTTT	720	0.0	42.5	1
GCTCGTA	45	1.916851E-8	40.0	32
TCACGAC	40	3.4421828E-7	39.375	25
CTCACGA	40	3.4421828E-7	39.375	24
CACGACG	40	3.4421828E-7	39.375	26
CGGGGTC	40	3.4421828E-7	39.375	6
CGTAACC	40	3.4421828E-7	39.375	35
CGGTCTA	40	3.4421828E-7	39.375	31
TTAGGAT	30	1.1370875E-4	37.499996	5
CGGTTTA	30	1.1370875E-4	37.499996	1
ATGCGAG	30	1.1370875E-4	37.499996	1
ATACGGG	60	1.546141E-10	37.499996	3