SRR2936374.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936374.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	248952
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6204	2.4920466595970305	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1137	0.456714547382628	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	512	0.20566213567274014	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGTC	20	7.022629E-4	45.000004	32
GCTAGCG	20	7.022629E-4	45.000004	1
TATCGCG	20	7.022629E-4	45.000004	1
TAGTCGG	20	7.022629E-4	45.000004	2
ACGGTCT	30	2.1586293E-6	45.000004	30
CGGTTTA	55	1.8189894E-12	45.0	1
CTGGTCG	25	3.881976E-5	45.0	44
TATACGG	25	3.881976E-5	45.0	2
CGTTTTT	2645	0.0	44.06427	1
CGGTTTT	155	0.0	43.54839	1
CGTTTTA	465	0.0	43.54839	1
TGCACGG	45	1.9179424E-8	40.0	2
GTACGGG	115	0.0	39.130436	3
TCACGAC	35	6.228589E-6	38.571426	25
CTCACGA	35	6.228589E-6	38.571426	24
CACGACG	35	6.228589E-6	38.571426	26
CGGTCTA	35	6.228589E-6	38.571426	31
ACAACGA	30	1.13735456E-4	37.500004	13
CGAGTCG	30	1.13735456E-4	37.500004	28
TATGGGC	30	1.13735456E-4	37.500004	4