SRR2936371.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936371.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	171817
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2194	1.2769400001164029	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCG	1389	0.8084182589615695	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGC	1218	0.7088937648777478	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTC	1107	0.6442901459110566	No Hit
GCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC	432	0.2514303008433391	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	383	0.2229115861643493	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCT	339	0.19730294441178695	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCT	303	0.17635041934150872	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCG	230	0.13386335461566667	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGC	219	0.12746119417752608	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	214	0.12455112125109855	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTT	202	0.11756694622767246	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	202	0.11756694622767246	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGGGTCTTCGTATGCCG	183	0.10650866910724784	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTT	183	0.10650866910724784	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC	180	0.1047626253513913	No Hit
GAATCTATCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTC	173	0.10068852325439276	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	30	2.1546966E-6	45.000004	25
CTCACGA	30	2.1546966E-6	45.000004	24
CGACGGT	30	2.1546966E-6	45.000004	28
CGGTTTA	30	2.1546966E-6	45.000004	1
GTAATGG	30	2.1546966E-6	45.000004	2
GCGATTC	30	2.1546966E-6	45.000004	9
TCTCACG	30	2.1546966E-6	45.000004	23
ATTGCGG	30	2.1546966E-6	45.000004	2
GCATATC	30	2.1546966E-6	45.000004	28
CGGCGTT	25	3.8769194E-5	45.0	42
AGCGTCG	25	3.8769194E-5	45.0	17
CTCACGT	25	3.8769194E-5	45.0	45
GCAAGGT	20	7.0165267E-4	45.0	4
ATTAGGA	25	3.8769194E-5	45.0	4
CCGATGA	20	7.0165267E-4	45.0	10
AACCCGG	25	3.8769194E-5	45.0	38
CCGGCGT	25	3.8769194E-5	45.0	41
GGCGTAG	20	7.0165267E-4	45.0	1
TCGGGCG	25	3.8769194E-5	45.0	27
GCGCCTT	25	3.8769194E-5	45.0	31