SRR2936369.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936369.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	197179
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1529	0.7754375465947185	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCG	1113	0.564461732740302	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTC	1063	0.5391040628058769	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGC	917	0.46505966659735576	No Hit
GCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	286	0.14504587202491137	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCG	283	0.14352441182884587	No Hit
GAATCTATCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTC	266	0.13490280405114133	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCT	243	0.12323827588130581	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGC	231	0.1171524350970438	No Hit
GAACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCT	230	0.1166452816983553	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	225	0.1141095147049128	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGGT	30	2.1563283E-6	45.000004	5
GTCGAGG	25	3.8790164E-5	45.0	2
GGCACGT	20	7.019059E-4	45.0	11
CGCATGG	20	7.019059E-4	45.0	2
ACCGATC	20	7.019059E-4	45.0	10
GCACGTG	20	7.019059E-4	45.0	12
TAACGTC	20	7.019059E-4	45.0	32
AGGGTAC	25	3.8790164E-5	45.0	6
TACGGAG	20	7.019059E-4	45.0	1
GCGCATG	20	7.019059E-4	45.0	1
ACGGCGG	20	7.019059E-4	45.0	17
GGTATCC	20	7.019059E-4	45.0	38
GTCAAGC	20	7.019059E-4	45.0	16
GCGATTG	25	3.8790164E-5	45.0	9
TAGGCGA	25	3.8790164E-5	45.0	6
TCGAGGG	45	3.8198777E-10	45.0	3
CGTTTTA	100	0.0	45.0	1
CGTTTTT	545	0.0	41.69725	1
TACGGCT	135	0.0	41.666664	7
GCGATGT	65	0.0	41.53846	9