SRR2936368.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936368.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	221012
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3085	1.3958518089515501	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	537	0.24297323222268477	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCG	445	0.20134653321991566	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGC	444	0.20089406910032032	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTC	380	0.17193636544622012	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	313	0.14162126943333395	No Hit
GCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC	224	0.10135196278935081	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	20	7.0209114E-4	45.0	1
GCTAACG	20	7.0209114E-4	45.0	1
GCCACCG	25	3.8805512E-5	45.0	9
TAGGCGA	30	2.1575215E-6	44.999996	6
CGTTTTT	1525	0.0	44.409836	1
CGTTTTA	245	0.0	43.163265	1
CGAAGGA	75	0.0	42.0	4
AGGCGAT	105	0.0	40.714287	7
CGGTTTA	50	1.0732037E-9	40.5	1
CGGTTTT	195	0.0	40.384617	1
GGCGATT	85	0.0	39.705883	8
GGCGATA	75	0.0	39.0	8
ATTGGGC	35	6.225413E-6	38.57143	4
CGTATGG	30	1.1369408E-4	37.499996	2
AAGCGGC	30	1.1369408E-4	37.499996	22
AAACGGC	30	1.1369408E-4	37.499996	6
TGCGAAG	30	1.1369408E-4	37.499996	2
CCAAGCG	30	1.1369408E-4	37.499996	20
CGGCTAC	30	1.1369408E-4	37.499996	25
TTTGCGG	60	1.546141E-10	37.499996	2