SRR2936359.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936359.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	342844
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4919	1.434763332594416	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	842	0.24559274772199602	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	462	0.1347551656146819	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	20	7.026352E-4	45.000004	1
CTCACGA	35	1.2085911E-7	45.000004	24
GCCGATA	40	6.7902874E-9	45.000004	9
TACGCGG	30	2.1610285E-6	45.000004	2
ACGGTCT	35	1.2085911E-7	45.000004	30
CGTTTTA	310	0.0	43.548386	1
CGTTTTT	1940	0.0	43.144333	1
TACGAAA	50	1.0768417E-9	40.500004	20
CATACGA	50	1.0768417E-9	40.500004	18
CACGACG	40	3.4487675E-7	39.375004	26
CGGTTTT	190	0.0	39.078945	1
GTATGCG	35	6.2354666E-6	38.57143	1
TAAGGTA	35	6.2354666E-6	38.57143	5
GGCCGAT	100	0.0	38.250004	8
TAAACGG	30	1.13825125E-4	37.500004	2
CACGCAA	30	1.13825125E-4	37.500004	36
GTAAGGC	30	1.13825125E-4	37.500004	4
TAGTGCG	30	1.13825125E-4	37.500004	1
ATGACGG	55	2.737579E-9	36.81818	2
ACATACG	55	2.737579E-9	36.81818	17