SRR2936356.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936356.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	167425
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTC	284	0.16962819172763924	No Hit
GCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	277	0.16544721517097208	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	269	0.16066895624906674	No Hit
CCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	256	0.15290428550097057	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCG	242	0.14454233238763625	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGC	182	0.10870539047334628	No Hit
CTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGCT	171	0.10213528445572645	Illumina Single End Adapter 1 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGG	20	7.016009E-4	45.0	3
GGCACCG	40	6.7557266E-9	45.0	8
CACGCCG	20	7.016009E-4	45.0	26
AGGCGAT	40	6.7557266E-9	45.0	7
GGCCCCT	20	7.016009E-4	45.0	8
TCGGCAT	20	7.016009E-4	45.0	45
GGCGATA	45	3.8016879E-10	45.0	8
CGGTAGT	20	7.016009E-4	45.0	12
CTTAGTC	25	3.8764912E-5	45.0	40
GTACGTA	20	7.016009E-4	45.0	22
TACGTAG	20	7.016009E-4	45.0	23
CGTTTTT	165	0.0	40.90909	1
ATAGCGG	45	1.911394E-8	40.0	2
AAGGATC	45	1.911394E-8	40.0	6
TTAGCGG	40	3.4346704E-7	39.375	2
CTATCTC	75	0.0	39.0	5
TCGATGG	35	6.2163617E-6	38.57143	2
ATACTCT	35	6.2163617E-6	38.57143	27
GCGGGTG	35	6.2163617E-6	38.57143	5
AGTACGG	35	6.2163617E-6	38.57143	2