SRR2936354.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936354.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	163757
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCG	815	0.4976886484241895	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGC	735	0.4488357749592384	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTC	674	0.4115854589422131	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	367	0.22411255702046323	No Hit
GCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGC	261	0.15938249967940302	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCG	204	0.12457482733562535	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGC	173	0.1056443388679568	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGTAG	25	3.8761176E-5	45.000004	1
ACACGCG	25	3.8761176E-5	45.000004	36
GGCCGAT	25	3.8761176E-5	45.000004	8
TCGGCAC	20	7.015558E-4	45.000004	27
CCATCGA	20	7.015558E-4	45.000004	31
CAAATGG	20	7.015558E-4	45.000004	23
AGCGACT	30	2.1540745E-6	45.000004	19
CTGGGAC	20	7.015558E-4	45.000004	5
CACAACG	30	2.1540745E-6	45.000004	12
AAGGCGA	30	2.1540745E-6	45.000004	6
ATGGGCG	55	1.8189894E-12	45.0	5
CACGGGA	70	0.0	41.785713	4
ATCTATC	45	1.9110303E-8	39.999996	3
CGTTTTT	165	0.0	39.545456	1
CATATGC	40	3.434052E-7	39.375004	33
TGGGACT	40	3.434052E-7	39.375004	6
CTATCTC	75	0.0	39.0	5
ACAACGA	35	6.215534E-6	38.571426	13
GTGCAAG	35	6.215534E-6	38.571426	1
CGGGAAC	35	6.215534E-6	38.571426	6