SRR2936353.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936353.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	225264
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2256	1.0014915832090348	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCG	1274	0.5655586334256694	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC	1057	0.46922721784217625	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGC	941	0.4177320832445486	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	342	0.15182186234817813	No Hit
GCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	312	0.13850415512465375	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	307	0.13628453725406633	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	234	0.10387811634349031	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCACTA	30	2.157707E-6	45.000004	8
GCGCGCC	35	1.2061173E-7	45.000004	16
CGCGCCT	35	1.2061173E-7	45.000004	17
ACGGGTA	30	2.157707E-6	45.000004	5
TACGAAT	60	0.0	45.000004	12
CGAATAT	60	0.0	45.000004	14
GCTACGA	60	0.0	45.000004	10
ACAACGA	40	6.7739165E-9	45.0	13
CGGGTCT	25	3.8807906E-5	45.0	6
GGCCGAT	25	3.8807906E-5	45.0	8
ACACAAC	40	6.7739165E-9	45.0	11
CCTCGTG	50	2.1827873E-11	45.0	15
AGGCGAT	40	6.7739165E-9	45.0	7
ACGGGTC	20	7.0212013E-4	45.0	5
TTGACGG	25	3.8807906E-5	45.0	2
GCGATAT	20	7.0212013E-4	45.0	9
CGTACGG	20	7.0212013E-4	45.0	31
TGCAACG	20	7.0212013E-4	45.0	1
TACGGCT	195	0.0	42.692307	7
CGTTTTT	965	0.0	41.96891	1