SRR2936352.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936352.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	177037
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2272	1.2833475488174788	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCG	682	0.3852302061151059	No Hit
GAATCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTC	631	0.35642266870767125	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGC	554	0.31292893575919156	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	390	0.22029293311567635	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	225	0.1270920767975056	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	212	0.11974897902698306	No Hit
GCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC	185	0.10449792981128238	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAGAC	25	3.8774E-5	45.0	21
ACACGCG	40	6.7593646E-9	45.0	36
CTCGTTC	25	3.8774E-5	45.0	15
GACACGA	25	3.8774E-5	45.0	25
GGCACCG	35	1.2041528E-7	45.0	8
AGGCGAT	50	2.1827873E-11	45.0	7
ACGGGTA	20	7.0171047E-4	45.0	5
CTACGAA	20	7.0171047E-4	45.0	11
TACGAAT	20	7.0171047E-4	45.0	12
GCTACGA	20	7.0171047E-4	45.0	10
GTAAGGC	25	3.8774E-5	45.0	4
AGCTACG	20	7.0171047E-4	45.0	9
AGCACGG	20	7.0171047E-4	45.0	2
ACAACGA	30	2.1550695E-6	44.999996	13
GAATCTA	30	2.1550695E-6	44.999996	1
CCCCGAT	30	2.1550695E-6	44.999996	40
CACAACG	30	2.1550695E-6	44.999996	12
CCCGATC	30	2.1550695E-6	44.999996	41
CGTTTTA	135	0.0	43.333332	1
GCGGGAT	85	0.0	42.35294	5