SRR2936349.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936349.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	167818
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCG	541	0.3223730469913835	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTC	524	0.31224302518204244	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	500	0.29794181792179625	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGC	477	0.2842364942973936	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	227	0.1352655853364955	No Hit
GCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC	193	0.11500554171781335	Illumina Single End Adapter 1 (95% over 21bp)
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	180	0.10725905445184664	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTCGG	20	7.016057E-4	45.000004	24
CACGCCG	30	2.1543947E-6	45.000004	26
CTACATT	20	7.016057E-4	45.000004	22
CGTAACC	30	2.1543947E-6	45.000004	35
CGGTCTA	30	2.1543947E-6	45.000004	31
TAGGAAC	20	7.016057E-4	45.000004	6
GCGAGAC	55	1.8189894E-12	45.0	21
ACCGGAG	25	3.8765313E-5	45.0	32
CGACACC	55	1.8189894E-12	45.0	35
ACCTCCT	50	2.1827873E-11	45.0	39
CCATCGA	55	1.8189894E-12	45.0	31
TCGTCCC	25	3.8765313E-5	45.0	38
CGAATAT	35	1.2036435E-7	45.0	14
AACGACG	25	3.8765313E-5	45.0	13
CACCGGA	25	3.8765313E-5	45.0	31
GCTCGTA	25	3.8765313E-5	45.0	32
TCGACAC	55	1.8189894E-12	45.0	34
TAGCTCG	25	3.8765313E-5	45.0	30
ACACGAC	60	3.6379788E-12	41.250004	26
GTAGGGT	60	3.6379788E-12	41.250004	4