SRR2936346.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936346.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	170271
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCG	1629	0.9567101855277763	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC	1500	0.8809486054583575	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGC	1301	0.7640760904675488	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	991	0.5820133786728215	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCG	431	0.2531258993017014	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCT	412	0.24196721696589557	No Hit
GCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	399	0.2343323290519231	Illumina Single End Adapter 2 (95% over 21bp)
GAATCTATCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC	339	0.1990943848335888	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGC	312	0.18323730993533838	No Hit
CCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	274	0.16091994526372663	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTC	266	0.15622155270128207	No Hit
GAACTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCT	233	0.1368406833811982	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	226	0.1327295898890592	No Hit
CTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCT	213	0.12509470197508676	Illumina Single End Adapter 2 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTT	176	0.10336463637378061	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGG	25	3.8767706E-5	45.000004	3
CACATCC	25	3.8767706E-5	45.000004	45
AAACGGC	50	2.1827873E-11	45.000004	6
CGTTTTC	25	3.8767706E-5	45.000004	1
TCGGGAT	20	7.016348E-4	45.0	6
TGCGGGC	20	7.016348E-4	45.0	4
ATCGTTG	20	7.016348E-4	45.0	23
TGACCGG	20	7.016348E-4	45.0	2
AGTGACG	20	7.016348E-4	45.0	10
TACGAAT	45	3.8016879E-10	45.0	12
CGGCTTC	20	7.016348E-4	45.0	42
CCGGTCG	20	7.016348E-4	45.0	14
ATTATCC	20	7.016348E-4	45.0	45
GACGAGA	20	7.016348E-4	45.0	13
GGCGAAC	20	7.016348E-4	45.0	8
CTTAGGT	20	7.016348E-4	45.0	4
GACCTAT	40	6.7557266E-9	45.0	33
TGCATAT	65	0.0	44.999996	27
AGTTAAT	75	0.0	42.0	39
GCATATC	70	0.0	41.785717	28