SRR2936341.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936341.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	181127
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1439	0.7944701783831234	No Hit
GAATCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTC	968	0.5344316418866321	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCG	883	0.48750324358047115	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGC	804	0.4438874380959216	No Hit
GCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	318	0.17556741954540184	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	229	0.1264306260248334	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCG	228	0.1258785272212315	No Hit
GAATCTATCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTC	208	0.11483655114919367	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCT	203	0.1120760571311842	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAG	20	7.0175383E-4	45.0	6
CTCACGA	20	7.0175383E-4	45.0	24
TTGGCAA	20	7.0175383E-4	45.0	1
TAGACGG	40	6.7611836E-9	45.0	2
TACGGTT	20	7.0175383E-4	45.0	33
ATATGAG	20	7.0175383E-4	45.0	1
ATCAACC	20	7.0175383E-4	45.0	10
CGTTAAG	20	7.0175383E-4	45.0	2
AATGCGG	20	7.0175383E-4	45.0	2
TCTCGTG	20	7.0175383E-4	45.0	43
TCGTACG	20	7.0175383E-4	45.0	30
CGTCACG	20	7.0175383E-4	45.0	36
GTACGGT	20	7.0175383E-4	45.0	32
ACGGTTA	20	7.0175383E-4	45.0	34
CGTTTTA	90	0.0	42.5	1
CGTTTTT	545	0.0	42.11009	1
GACGGGA	65	0.0	41.538464	4
CTCGTCC	60	3.6379788E-12	41.249996	37
AAGGGCG	45	1.9128493E-8	40.0	5
AGGCGAT	40	3.4367622E-7	39.375	7