SRR2936340.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936340.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	86388
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCG	630	0.7292679538824837	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGC	588	0.6806500902903181	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTC	483	0.5591054313099041	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	224	0.2592952724915497	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	203	0.23498634069546698	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGC	142	0.1643746816687503	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCG	139	0.16090197712645274	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	129	0.1493262953187943	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	128	0.14816872713802842	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	109	0.12617493170347735	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	109	0.12617493170347735	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCT	102	0.11807195443811641	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	92	0.10649627263045794	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATTC	30	2.1421783E-6	45.000004	43
GAATCTA	25	3.8608086E-5	45.000004	1
TATGCTT	30	2.1421783E-6	45.000004	37
ACGGGAG	25	3.8608086E-5	45.000004	5
TGATTCA	30	2.1421783E-6	45.000004	44
TACGAAT	30	2.1421783E-6	45.000004	12
CGGGATA	25	3.8608086E-5	45.000004	6
CGAATAT	30	2.1421783E-6	45.000004	14
ATGAAAC	25	3.8608086E-5	45.000004	3
GCTACGA	25	3.8608086E-5	45.000004	10
AGCTACG	25	3.8608086E-5	45.000004	9
AGGGCGA	30	2.1421783E-6	45.000004	6
AAGGAAC	25	3.8608086E-5	45.000004	6
TGACTAT	30	2.1421783E-6	45.000004	23
ACACGGG	20	6.997062E-4	45.0	3
TCCGCCC	20	6.997062E-4	45.0	35
CACGGGA	20	6.997062E-4	45.0	4
GGCCGAT	20	6.997062E-4	45.0	8
TTTCCGC	20	6.997062E-4	45.0	33
TAACGGG	20	6.997062E-4	45.0	3