SRR2936338.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936338.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	136260
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1591	1.1676207250843975	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGC	381	0.27961250550418315	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC	362	0.2656685747835021	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCG	359	0.2634669015118156	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	280	0.20548950535740496	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	153	0.11228533685601057	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGCGG	35	1.2014061E-7	45.000004	2
CGGTTTT	70	0.0	45.000004	1
GGCGATC	35	1.2014061E-7	45.000004	8
AGACTAT	20	7.011392E-4	45.0	34
GATAATT	20	7.011392E-4	45.0	9
CTCGTCC	45	3.8016879E-10	45.0	37
GGGTATC	20	7.011392E-4	45.0	8
TAGCGGG	85	0.0	45.0	3
GACCGAT	25	3.8726685E-5	45.0	9
TCCTCGT	45	3.8016879E-10	45.0	35
CCTCGTC	45	3.8016879E-10	45.0	36
ACGGGTA	20	7.011392E-4	45.0	5
CTACGAA	20	7.011392E-4	45.0	11
TACGAAT	25	3.8726685E-5	45.0	12
GCGATGT	25	3.8726685E-5	45.0	9
GCGATGA	25	3.8726685E-5	45.0	9
TCGAGGG	25	3.8726685E-5	45.0	3
ATAGTGG	20	7.011392E-4	45.0	1
AGCTACG	20	7.011392E-4	45.0	9
CGTCCCC	45	3.8016879E-10	45.0	39