SRR2936337.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936337.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	237610
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1462	0.6152939691090442	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCG	1091	0.4591557594377341	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC	1022	0.43011657758511845	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGC	907	0.3817179411640924	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	315	0.1325701780228105	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTT	291	0.12246959303059636	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	282	0.11868187365851605	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTT	264	0.11110643491435546	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCG	240	0.10100584992214132	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	20	7.02198E-4	45.000004	6
GCGAAAA	20	7.02198E-4	45.000004	1
ATTACGG	20	7.02198E-4	45.000004	2
CGATTGA	20	7.02198E-4	45.000004	10
TATGCGG	20	7.02198E-4	45.000004	2
CCCACAT	20	7.02198E-4	45.000004	45
CGAATAT	45	3.8198777E-10	45.000004	14
GCTACGA	45	3.8198777E-10	45.000004	10
CAATACA	20	7.02198E-4	45.000004	38
TGCGTAG	20	7.02198E-4	45.000004	1
ACAACCT	25	3.8814378E-5	45.0	37
AATCCCC	25	3.8814378E-5	45.0	37
ATATCAC	50	2.1827873E-11	45.0	30
ATCTATC	70	0.0	41.785713	3
GCATATC	55	6.002665E-11	40.909092	28
GACCCAC	50	1.0732037E-9	40.5	12
TACGAAT	50	1.0732037E-9	40.5	12
TCTATCT	75	0.0	39.0	4
CTATCTC	110	0.0	38.863636	5
ACATACG	70	0.0	38.571426	17