##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936337.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 237610 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.10045031774757 33.0 31.0 34.0 30.0 34.0 2 32.21677117966416 33.0 31.0 34.0 30.0 34.0 3 32.0275198855267 33.0 31.0 34.0 30.0 34.0 4 35.80565632759564 37.0 35.0 37.0 35.0 37.0 5 35.901254155969866 37.0 35.0 37.0 35.0 37.0 6 35.876596102857626 37.0 35.0 37.0 35.0 37.0 7 26.710054290644333 36.0 10.0 37.0 0.0 37.0 8 31.075097849417112 35.0 19.0 37.0 17.0 37.0 9 35.921425865914735 39.0 32.0 39.0 32.0 39.0 10 36.778018601910695 38.0 35.0 39.0 33.0 39.0 11 37.16104961912377 39.0 37.0 39.0 34.0 39.0 12 37.208345608349816 39.0 37.0 39.0 34.0 39.0 13 37.18672193931232 39.0 37.0 39.0 34.0 39.0 14 38.46726147889399 40.0 38.0 41.0 34.0 41.0 15 38.502529354825135 40.0 38.0 41.0 34.0 41.0 16 38.43541517612895 40.0 38.0 41.0 34.0 41.0 17 38.311076974874794 40.0 37.0 41.0 34.0 41.0 18 38.18443668195783 40.0 37.0 41.0 33.0 41.0 19 38.057809014772104 40.0 37.0 41.0 34.0 41.0 20 38.112937165944196 40.0 37.0 41.0 34.0 41.0 21 38.086103278481545 40.0 37.0 41.0 34.0 41.0 22 38.070476831783175 40.0 37.0 41.0 34.0 41.0 23 38.046546862505785 40.0 37.0 41.0 34.0 41.0 24 37.98040065653802 40.0 36.0 41.0 34.0 41.0 25 37.88622953579395 40.0 36.0 41.0 33.0 41.0 26 37.75982492319347 40.0 36.0 41.0 33.0 41.0 27 37.69682673288161 40.0 36.0 41.0 33.0 41.0 28 37.63518370438955 40.0 36.0 41.0 33.0 41.0 29 37.590328689869956 40.0 36.0 41.0 33.0 41.0 30 37.5075249358192 40.0 36.0 41.0 33.0 41.0 31 37.40416649130929 40.0 36.0 41.0 33.0 41.0 32 37.26692479272758 40.0 35.0 41.0 32.0 41.0 33 37.126223643786034 40.0 35.0 41.0 32.0 41.0 34 36.94621017633938 39.0 35.0 41.0 31.0 41.0 35 36.851710786583055 39.0 35.0 41.0 31.0 41.0 36 36.728559404065486 39.0 35.0 41.0 31.0 41.0 37 36.665822145532594 39.0 35.0 41.0 31.0 41.0 38 36.54838601068979 39.0 35.0 41.0 30.0 41.0 39 36.46004376920163 39.0 35.0 41.0 30.0 41.0 40 36.269109044232145 39.0 35.0 41.0 30.0 41.0 41 36.17772821009217 39.0 35.0 41.0 30.0 41.0 42 36.10517654980851 39.0 35.0 40.0 29.0 41.0 43 36.07816169353142 39.0 35.0 40.0 29.0 41.0 44 35.92361432599638 39.0 35.0 40.0 29.0 41.0 45 35.84085686629351 38.0 35.0 40.0 28.0 41.0 46 35.67223601700265 38.0 35.0 40.0 28.0 41.0 47 35.51540760069021 38.0 35.0 40.0 27.0 41.0 48 35.395509448255545 38.0 34.0 40.0 26.0 41.0 49 35.232250326164724 38.0 34.0 40.0 26.0 41.0 50 35.03442616051513 38.0 34.0 40.0 26.0 41.0 51 32.9793064264972 36.0 31.0 39.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 6.0 9 25.0 10 21.0 11 18.0 12 9.0 13 10.0 14 14.0 15 20.0 16 30.0 17 52.0 18 97.0 19 177.0 20 272.0 21 419.0 22 625.0 23 828.0 24 1234.0 25 1785.0 26 2324.0 27 2756.0 28 3013.0 29 3577.0 30 4477.0 31 5594.0 32 7088.0 33 10291.0 34 15942.0 35 19650.0 36 22089.0 37 35385.0 38 46583.0 39 53179.0 40 19.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.11893438828332 20.19948655359623 22.29830394343672 13.383275114683727 2 32.24822187618366 25.998905769959173 24.817137325870124 16.935735027987036 3 31.386726147889398 25.92651824418164 26.310761331593792 16.37599427633517 4 28.425150456630615 24.476663440090903 28.27490425487143 18.823281848407053 5 26.492992719161652 29.03034384074744 24.620596776229956 19.85606666386095 6 25.89116619670889 35.11847144480451 24.867640250831194 14.122722107655402 7 58.70291654391651 28.596439543790243 8.420521021842516 4.280122890450739 8 79.2218340978915 7.0922940953663565 9.6603678296368 4.025503977105341 9 72.22044526745506 8.924708556037205 11.281090863179159 7.573755313328563 10 40.150667059467196 27.88519001725517 17.950843819704556 14.013299103573083 11 30.68431463322251 25.233786456798956 25.924834813349605 18.15706409662893 12 30.244097470645176 22.91317705483776 28.31488573713228 18.52783973738479 13 24.848701653970792 23.331509616598627 30.273978367913806 21.54581036151677 14 20.25377719792938 27.525777534615546 29.068221034468245 23.152224232986825 15 20.07028323723749 26.84777576701317 33.35255250199907 19.729388493750264 16 23.29279070746181 26.05572156054038 30.365304490551743 20.286183241446068 17 22.392155212322713 26.437018643996463 28.64904675729136 22.52177938638946 18 22.59711291612306 28.14191321914061 28.05563738899878 21.205336475737553 19 24.589032448129288 28.105719456251844 26.3823071419553 20.922940953663566 20 26.081393880728925 26.227852363116032 28.929337990825303 18.76141576532974 21 25.490509658684402 27.709271495307437 27.709271495307437 19.09094735070073 22 24.021295400025252 24.836917638146545 28.4811245317958 22.660662430032406 23 24.240983123605908 26.717730735238415 29.006775809098944 20.034510332056733 24 24.078111190606457 24.51748663776777 29.042969571987708 22.36143259963806 25 23.06510668742898 27.593114767896974 26.843988047641094 22.497790497032955 26 21.33285636126426 27.952106392828586 28.138125499768528 22.57691174613863 27 22.369008038382223 27.85194225832246 28.264803669879214 21.5142460334161 28 19.97601111064349 28.234081057194558 30.09763898825807 21.692268843903875 29 22.358486595682 26.225327216867978 29.17217288834645 22.244013299103575 30 21.766339800513446 25.65253987626783 31.21880392239384 21.36231640082488 31 23.469130087117545 25.849922141324015 28.692395101216277 21.988552670342155 32 23.892092083666512 27.072513783089935 27.686124321366947 21.349269811876603 33 22.646774125668113 26.814107150372458 27.706325491351375 22.832793232608058 34 22.653507848996256 26.841462901393037 29.631749505492195 20.873279744118513 35 22.307141955304914 26.894490972602163 28.581288666301923 22.217078405791003 36 22.04578931863137 29.64521695214848 28.208408737006017 20.10058499221413 37 22.3349185640335 28.762257480745763 28.546778334245193 20.35604562097555 38 21.646395353730906 28.107823744791887 26.877235806573797 23.36854509490341 39 23.974580194436264 26.00606035099533 26.892807541770125 23.12655191279828 40 22.867724422372795 26.34948024073061 28.968056899962125 21.814738436934473 41 20.288287529986114 28.159168385168975 29.306847354909305 22.24569672993561 42 20.595513656832626 27.976936997601108 29.314001935945456 22.113547409620807 43 22.169521484785996 26.734985901266782 27.65245570472623 23.443036909220993 44 21.911956567484534 26.210597197087665 28.17263583182526 23.70481040360254 45 22.07735364673204 25.72534825975338 27.677707167206766 24.519590926307817 46 22.41656495938723 28.264382812171206 27.02032742729683 22.298724801144733 47 21.43975421909852 25.943773410210007 30.433062581541183 22.18340978915029 48 21.35221581583267 26.33769622490636 29.458356129792516 22.85173182946846 49 20.993224190901056 26.339379655738394 29.631328647784184 23.036067505576366 50 19.67173098775304 26.252262110180546 29.856066663860947 24.21994023820546 51 20.205378561508354 25.612137536298977 28.85232103025967 25.330162871933 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 89.0 1 325.0 2 561.0 3 1721.0 4 2881.0 5 1929.5 6 978.0 7 831.0 8 684.0 9 655.5 10 627.0 11 626.5 12 626.0 13 607.5 14 589.0 15 601.5 16 614.0 17 651.5 18 689.0 19 682.0 20 675.0 21 789.5 22 904.0 23 1061.0 24 1218.0 25 1549.0 26 2276.0 27 2672.0 28 3230.5 29 3789.0 30 4586.0 31 5383.0 32 6310.5 33 7238.0 34 7594.0 35 7950.0 36 8331.0 37 8712.0 38 9279.0 39 9846.0 40 10815.0 41 11784.0 42 12953.0 43 14122.0 44 17352.5 45 20583.0 46 18759.5 47 16936.0 48 16608.0 49 16280.0 50 15457.0 51 14634.0 52 13623.0 53 12612.0 54 12228.0 55 11844.0 56 11818.5 57 11793.0 58 11749.0 59 11705.0 60 11383.5 61 11062.0 62 10013.5 63 8965.0 64 7474.0 65 5983.0 66 4991.0 67 3999.0 68 3292.0 69 2585.0 70 2088.5 71 1592.0 72 1328.0 73 1064.0 74 870.0 75 507.0 76 338.0 77 271.0 78 204.0 79 155.5 80 107.0 81 84.5 82 62.0 83 42.0 84 22.0 85 24.5 86 27.0 87 20.0 88 13.0 89 8.0 90 3.0 91 3.5 92 4.0 93 3.5 94 3.0 95 2.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 237610.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.58664216779892 #Duplication Level Percentage of deduplicated Percentage of total 1 64.80960671850531 27.600235303567626 2 11.403930797991585 9.713102404008184 3 6.756548236220581 8.632161060761966 4 4.402990306545924 7.500342906126341 5 3.1809812422833774 6.773365495380135 6 2.3989854605648873 6.129884122489749 7 1.8699886530539767 5.57455763378178 8 1.4089914498956535 4.80033717553555 9 1.0899933856382893 4.1777242451500936 >10 2.6229840830526294 14.54452763960425 >50 0.02599984222621722 0.7610186774799468 >100 0.024999848294439637 1.8840216167718435 >500 9.999939317775854E-4 0.38625850054522204 >1k 0.0029999817953327563 1.5224632187973195 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1462 0.6152939691090442 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCG 1091 0.4591557594377341 No Hit GAATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC 1022 0.43011657758511845 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGC 907 0.3817179411640924 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 315 0.1325701780228105 No Hit GAATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTT 291 0.12246959303059636 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 282 0.11868187365851605 No Hit GAATGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTT 264 0.11110643491435546 No Hit GAATGAAACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCG 240 0.10100584992214132 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06607466015740078 0.0 2 0.0 0.0 0.0 0.33331930474306637 0.0 3 0.0 0.0 0.0 0.44484659736543075 0.0 4 0.0 0.0 0.0 0.6780017676023736 0.0 5 0.0 0.0 0.0 1.6405033458187788 0.0 6 0.0 0.0 0.0 2.058835907579647 0.0 7 0.0 0.0 0.0 2.3816337696224905 0.0 8 0.0 0.0 0.0 2.925802786078027 0.0 9 0.0 0.0 0.0 3.1273936282143007 0.0 10 0.0 0.0 0.0 4.121038676823366 0.0 11 0.0 0.0 0.0 4.6273304995580995 0.0 12 0.0 0.0 0.0 5.522915702201086 0.0 13 0.0 0.0 0.0 5.7186145364252345 0.0 14 0.0 0.0 0.0 5.83350869071167 0.0 15 0.0 0.0 0.0 6.039308109928033 0.0 16 0.0 0.0 0.0 6.329279070746181 0.0 17 0.0 0.0 0.0 6.656285509869114 0.0 18 0.0 0.0 0.0 6.990867387736206 0.0 19 0.0 0.0 0.0 7.213921972980935 0.0 20 0.0 0.0 0.0 7.441185135305753 0.0 21 0.0 0.0 0.0 7.74672783132023 0.0 22 0.0 0.0 0.0 8.045115946298557 0.0 23 0.0 0.0 0.0 8.339295484196793 0.0 24 0.0 0.0 0.0 8.562770927149531 0.0 25 0.0 0.0 0.0 8.78961323176634 0.0 26 0.0 0.0 0.0 9.012667817011069 0.0 27 0.0 0.0 0.0 9.219729809351458 0.0 28 0.0 0.0 0.0 9.460460418332561 0.0 29 0.0 0.0 0.0 9.673414418585077 0.0 30 0.0 0.0 0.0 9.934346197550608 0.0 31 0.0 0.0 0.0 10.162871932999453 0.0 32 0.0 0.0 0.0 10.412861411556753 0.0 33 0.0 0.0 0.0 10.672951475106267 0.0 34 0.0 0.0 0.0 10.908631791591263 0.0 35 0.0 0.0 0.0 11.161988131812635 0.0 36 0.0 0.0 0.0 11.404823029333782 0.0 37 0.0 0.0 0.0 11.672909389335466 0.0 38 0.0 0.0 0.0 11.946887757249273 0.0 39 0.0 0.0 0.0 12.214974117250957 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAT 20 7.02198E-4 45.000004 6 GCGAAAA 20 7.02198E-4 45.000004 1 ATTACGG 20 7.02198E-4 45.000004 2 CGATTGA 20 7.02198E-4 45.000004 10 TATGCGG 20 7.02198E-4 45.000004 2 CCCACAT 20 7.02198E-4 45.000004 45 CGAATAT 45 3.8198777E-10 45.000004 14 GCTACGA 45 3.8198777E-10 45.000004 10 CAATACA 20 7.02198E-4 45.000004 38 TGCGTAG 20 7.02198E-4 45.000004 1 ACAACCT 25 3.8814378E-5 45.0 37 AATCCCC 25 3.8814378E-5 45.0 37 ATATCAC 50 2.1827873E-11 45.0 30 ATCTATC 70 0.0 41.785713 3 GCATATC 55 6.002665E-11 40.909092 28 GACCCAC 50 1.0732037E-9 40.5 12 TACGAAT 50 1.0732037E-9 40.5 12 TCTATCT 75 0.0 39.0 4 CTATCTC 110 0.0 38.863636 5 ACATACG 70 0.0 38.571426 17 >>END_MODULE