SRR2936336.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936336.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	74062
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	206	0.27814533769004346	No Hit
GCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	152	0.2052334530528476	No Hit
CCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	116	0.1566255299613837	No Hit
CTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGCT	113	0.1525748697037617	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCG	76	0.1026167265264238	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCA	30	2.138011E-6	45.000004	5
CTACGAA	30	2.138011E-6	45.000004	11
TACGAAT	30	2.138011E-6	45.000004	12
ATTGGGA	30	2.138011E-6	45.000004	4
GCTACGA	30	2.138011E-6	45.000004	10
AGCTACG	30	2.138011E-6	45.000004	9
CGAAGGA	30	2.138011E-6	45.000004	4
CCCTGAC	20	6.990568E-4	45.0	27
ATTTATC	40	6.668415E-9	45.0	36
GTCATCC	20	6.990568E-4	45.0	13
TGTCACT	25	3.855442E-5	45.0	3
ACTATGA	25	3.855442E-5	45.0	25
AGTCATC	20	6.990568E-4	45.0	12
CATGATT	35	1.19147444E-7	45.0	32
CAGTTAA	20	6.990568E-4	45.0	30
TATTGGG	40	6.668415E-9	45.0	3
ATTCATC	40	6.668415E-9	45.0	14
CTAGTGG	20	6.990568E-4	45.0	2
TCTAACT	35	1.19147444E-7	45.0	24
CAGGATG	20	6.990568E-4	45.0	6