SRR2936334.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936334.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	197960
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	516	0.2606587189331178	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTC	356	0.1798343099616084	RNA PCR Primer, Index 41 (95% over 23bp)
GAATGATACCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCG	352	0.17781369973732067	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGC	326	0.1646797332794504	No Hit
GCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTCTGC	232	0.11719539300868863	Illumina PCR Primer Index 11 (96% over 25bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	217	0.10961810466760963	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	203	0.10254596888260256	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATATG	20	7.0191285E-4	45.0	1
CGTGGCG	20	7.0191285E-4	45.0	27
AAATCGA	20	7.0191285E-4	45.0	34
TATGGGT	20	7.0191285E-4	45.0	4
CAACCGT	20	7.0191285E-4	45.0	40
TCAGACG	25	3.879075E-5	45.0	22
AATCTCG	20	7.0191285E-4	45.0	18
CTATTGG	20	7.0191285E-4	45.0	2
CTCGAAC	20	7.0191285E-4	45.0	13
ATAACGG	20	7.0191285E-4	45.0	2
ACCCGCT	20	7.0191285E-4	45.0	34
CGGTAGT	25	3.879075E-5	45.0	12
GTAACGG	25	3.879075E-5	45.0	2
CACCCAT	45	3.8198777E-10	45.0	31
TAACGGG	60	3.6379788E-12	41.250004	3
CTATCTC	55	6.002665E-11	40.909092	5
ACGGGCT	50	1.0713848E-9	40.5	5
AACGGGA	45	1.9144863E-8	40.0	4
TAGGGCG	45	1.9144863E-8	40.0	5
CATACGA	45	1.9144863E-8	40.0	18