##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936334.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 197960 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.01601838755304 33.0 31.0 34.0 30.0 34.0 2 32.150015154576685 33.0 31.0 34.0 30.0 34.0 3 32.02229743382502 33.0 31.0 34.0 30.0 34.0 4 35.77317134774702 37.0 35.0 37.0 35.0 37.0 5 35.855652657102446 37.0 35.0 37.0 35.0 37.0 6 35.8372297433825 37.0 35.0 37.0 35.0 37.0 7 26.78132451000202 35.0 10.0 37.0 0.0 37.0 8 31.135193978581533 35.0 19.0 37.0 17.0 37.0 9 35.91261365932512 39.0 32.0 39.0 32.0 39.0 10 36.71067892503536 38.0 35.0 39.0 33.0 39.0 11 37.068261264902 39.0 37.0 39.0 34.0 39.0 12 37.0920135380885 39.0 37.0 39.0 34.0 39.0 13 37.04418569407961 39.0 37.0 39.0 33.0 39.0 14 38.2189937361083 40.0 37.0 41.0 33.0 41.0 15 38.28620933521923 40.0 37.0 41.0 34.0 41.0 16 38.2048999797939 40.0 37.0 41.0 33.0 41.0 17 38.08030915336432 40.0 37.0 41.0 33.0 41.0 18 38.01776621539705 40.0 37.0 41.0 33.0 41.0 19 37.926581127500505 40.0 37.0 41.0 33.0 41.0 20 37.96866538694686 40.0 36.0 41.0 33.0 41.0 21 37.93880581935745 40.0 36.0 41.0 33.0 41.0 22 37.93776015356638 40.0 36.0 41.0 33.0 41.0 23 37.90466255809255 40.0 36.0 41.0 33.0 41.0 24 37.83707314609012 40.0 36.0 41.0 33.0 41.0 25 37.75334916144676 40.0 36.0 41.0 33.0 41.0 26 37.61746312386341 40.0 36.0 41.0 33.0 41.0 27 37.49248332996565 39.0 36.0 41.0 33.0 41.0 28 37.432910689028084 39.0 36.0 41.0 33.0 41.0 29 37.385436451808445 39.0 36.0 41.0 33.0 41.0 30 37.310926449787836 39.0 35.0 41.0 32.0 41.0 31 37.16706910486967 39.0 35.0 41.0 32.0 41.0 32 37.04226106284098 39.0 35.0 41.0 31.0 41.0 33 36.948196605374825 39.0 35.0 41.0 31.0 41.0 34 36.76452313598707 39.0 35.0 41.0 31.0 41.0 35 36.70941604364518 39.0 35.0 41.0 31.0 41.0 36 36.58163770458678 39.0 35.0 41.0 30.0 41.0 37 36.51402808648212 39.0 35.0 41.0 30.0 41.0 38 36.40597090321277 39.0 35.0 41.0 30.0 41.0 39 36.33728531016367 39.0 35.0 41.0 30.0 41.0 40 36.168422913719944 39.0 35.0 40.0 30.0 41.0 41 36.101505354617096 39.0 35.0 40.0 29.0 41.0 42 36.045074762578295 39.0 35.0 40.0 29.0 41.0 43 36.030657708628006 38.0 35.0 40.0 29.0 41.0 44 35.854187714689836 38.0 35.0 40.0 29.0 41.0 45 35.75865831481107 38.0 35.0 40.0 28.0 41.0 46 35.60666801374015 38.0 35.0 40.0 28.0 41.0 47 35.478743180440496 38.0 34.0 40.0 27.0 41.0 48 35.38830571832693 38.0 34.0 40.0 27.0 41.0 49 35.221236613457265 38.0 34.0 40.0 26.0 41.0 50 35.0172964235199 38.0 34.0 40.0 26.0 41.0 51 32.7873459284704 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 15.0 10 11.0 11 12.0 12 7.0 13 9.0 14 4.0 15 14.0 16 15.0 17 31.0 18 65.0 19 138.0 20 218.0 21 365.0 22 552.0 23 721.0 24 1019.0 25 1421.0 26 1926.0 27 2284.0 28 2659.0 29 3131.0 30 3884.0 31 4904.0 32 6461.0 33 9129.0 34 14588.0 35 17417.0 36 18772.0 37 29481.0 38 37690.0 39 41003.0 40 8.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.47736916548798 21.46342695494039 24.880783996767022 13.178419882804606 2 31.531622550010102 25.845120226308342 25.28389573651243 17.339361487169125 3 32.53435037381289 24.568094564558496 26.60335421297232 16.294200848656295 4 29.55799151343706 24.7696504344312 26.64275611234593 19.029601939785813 5 25.316730652657103 29.878763386542733 24.763588603758336 20.040917357041828 6 26.8286522529804 34.59486765003031 25.00303091533643 13.573449181652858 7 60.7541927662154 28.30975954738331 6.749848454233179 4.186199232168115 8 81.93271367953122 6.194685795110123 7.869771671044655 4.002828854314003 9 74.8918973530006 8.454738330975955 10.296019397858153 6.357344918165286 10 41.913517882400484 28.07688421903415 16.537684380682965 13.4719135178824 11 32.09890887047889 25.20357648009699 24.982319660537485 17.715194988886644 12 31.234087694483737 22.174176601333603 27.961204283693675 18.63053142048899 13 25.63952313598707 23.826025459688825 29.079106890280865 21.45534451404324 14 19.890887047888462 27.775308143059203 29.051323499696906 23.282481309355425 15 20.612750050515256 26.345221256819563 33.50171751869064 19.54031117397454 16 23.82451000202061 25.418771468983632 30.68650232370176 20.070216205294 17 22.370680945645585 25.965346534653467 28.20064659527177 23.463325924429178 18 23.2001414427157 27.01252778339058 28.476459890887046 21.310870883006668 19 25.63699737320671 28.172358052131745 25.943624974742374 20.247019599919174 20 27.02414629218024 26.92867245908264 27.174176601333606 18.873004647403516 21 25.701151747827844 27.610628409779753 27.027177207516672 19.661042634875734 22 23.989694887856132 25.530915336431605 27.41614467569206 23.063245100020204 23 23.62649020004041 26.53212770256618 28.219337239846432 21.622044857546978 24 24.505455647605576 24.478177409577693 29.04273590624368 21.973631036573046 25 23.153667407557084 26.414427157001413 27.212063043039 23.219842392402505 26 21.50434431198222 27.5990099009901 27.864720145483936 23.031925641543747 27 21.789755506162862 27.914225095978985 27.925338452212568 22.370680945645585 28 20.476358860375836 28.192564154374622 29.20387957163063 22.127197413618912 29 22.42675287936957 27.08173368357244 28.624469589816126 21.867043847241867 30 22.657607597494444 26.182056981208323 28.166801374014955 22.993534047282278 31 24.557486360880986 27.13477470195999 26.116387148918975 22.19135178824005 32 24.575671852899575 28.68054152354011 26.059304910082847 20.68448171347747 33 23.94271570014144 27.15043443119822 25.968882602545968 22.937967266114367 34 22.299454435239443 27.007476257829865 28.35623358254193 22.336835724388767 35 21.552333804809052 26.511921600323298 28.392604566579106 23.54314002828854 36 22.027177207516672 28.819458476459893 26.846837744998993 22.30652657102445 37 22.525762780359667 29.548393614871692 26.871590220246517 21.054253384522127 38 22.113053142048898 28.37441907456052 26.0007072135785 23.511820569812084 39 23.530511214386745 27.11406344716104 26.319963629015962 23.03546170943625 40 22.402000404122045 26.489189735300062 28.50323297635886 22.605576884219033 41 19.358456253788646 27.083249141240657 28.45726409375631 25.10103051121439 42 20.875934532228733 26.722065063649218 27.89856536674076 24.503435037381287 43 22.1868054152354 25.321277025661747 27.329258436047688 25.162659123055164 44 21.50484946453829 26.514447363103656 27.102950090927457 24.877753081430594 45 21.7710648615882 26.335118205698123 26.224489795918366 25.66932713679531 46 22.043342089310972 28.189028086482114 26.26187108506769 23.50575873913922 47 20.900181854920184 25.72388361285108 29.571630632451 23.804303899777732 48 21.429581733683573 24.9136189129117 29.591331582137805 24.06546777126692 49 21.387654071529603 25.086886239644375 29.03919983835118 24.48625985047484 50 19.274095776924632 25.81430592038796 29.116993331986258 25.79460497070115 51 18.97656092139826 25.72691452818751 28.53101636694282 26.76550818347141 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 89.0 1 272.0 2 455.0 3 836.0 4 1217.0 5 850.5 6 484.0 7 443.5 8 403.0 9 385.0 10 367.0 11 380.5 12 394.0 13 420.0 14 446.0 15 466.5 16 487.0 17 471.0 18 455.0 19 585.0 20 715.0 21 802.0 22 889.0 23 950.0 24 1011.0 25 1269.0 26 1845.0 27 2163.0 28 2658.0 29 3153.0 30 3516.0 31 3879.0 32 4495.5 33 5112.0 34 5628.0 35 6144.0 36 6517.0 37 6890.0 38 7655.5 39 8421.0 40 9135.0 41 9849.0 42 10559.5 43 11270.0 44 12271.0 45 13272.0 46 14740.5 47 16209.0 48 15897.5 49 15586.0 50 14920.5 51 14255.0 52 13022.5 53 11790.0 54 10934.0 55 10078.0 56 9983.5 57 9889.0 58 9749.5 59 9610.0 60 9475.5 61 9341.0 62 8525.0 63 7709.0 64 6540.5 65 5372.0 66 4305.5 67 3239.0 68 2670.0 69 2101.0 70 1790.0 71 1479.0 72 1204.5 73 930.0 74 735.0 75 405.0 76 270.0 77 234.0 78 198.0 79 173.5 80 149.0 81 102.5 82 56.0 83 45.5 84 35.0 85 24.0 86 13.0 87 9.5 88 6.0 89 4.0 90 2.0 91 4.0 92 6.0 93 3.5 94 1.0 95 2.0 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 197960.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.530208122853104 #Duplication Level Percentage of deduplicated Percentage of total 1 69.13059261275978 30.78399676702364 2 9.941918504401489 8.854314002828854 3 5.338506216535076 7.131743786623561 4 3.6788728559760413 6.5528389573651245 5 2.742989381976586 6.1072944029096785 6 2.027180324893366 5.416245706203274 7 1.476994282602777 4.603960396039604 8 1.289817587802886 4.594867650030309 9 0.9880660677012434 3.9598908870478886 >10 3.340820401125329 19.646393210749647 >50 0.030628913694527637 0.9633259244291776 >100 0.012478446319992741 1.1244695898161243 >500 0.001134404210908431 0.2606587189331178 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 516 0.2606587189331178 No Hit GAATCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTC 356 0.1798343099616084 RNA PCR Primer, Index 41 (95% over 23bp) GAATGATACCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCG 352 0.17781369973732067 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGC 326 0.1646797332794504 No Hit GCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTCTGC 232 0.11719539300868863 Illumina PCR Primer Index 11 (96% over 25bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 217 0.10961810466760963 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 203 0.10254596888260256 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09143261264902 0.0 2 0.0 0.0 0.0 0.4480703172358052 0.0 3 0.0 0.0 0.0 0.5758739139220045 0.0 4 0.0 0.0 0.0 0.793089513032936 0.0 5 0.0 0.0 0.0 1.5942614669630228 0.0 6 0.0 0.0 0.0 1.9998989694887856 0.0 7 0.0 0.0 0.0 2.3898767427763183 0.0 8 0.0 0.0 0.0 3.1228531016366943 0.0 9 0.0 0.0 0.0 3.406748838149121 0.0 10 0.0 0.0 0.0 4.272075166700343 0.0 11 0.0 0.0 0.0 5.150030309153364 0.0 12 0.0 0.0 0.0 6.078500707213578 0.0 13 0.0 0.0 0.0 6.396241664982825 0.0 14 0.0 0.0 0.0 6.561931703374419 0.0 15 0.0 0.0 0.0 6.816023439078601 0.0 16 0.0 0.0 0.0 7.268640129319055 0.0 17 0.0 0.0 0.0 7.825823398666397 0.0 18 0.0 0.0 0.0 8.417357041826632 0.0 19 0.0 0.0 0.0 8.79824206910487 0.0 20 0.0 0.0 0.0 9.220549605981006 0.0 21 0.0 0.0 0.0 9.688826025459688 0.0 22 0.0 0.0 0.0 10.181349767629824 0.0 23 0.0 0.0 0.0 10.658213780561729 0.0 24 0.0 0.0 0.0 11.035562739947464 0.0 25 0.0 0.0 0.0 11.374520105071731 0.0 26 0.0 0.0 0.0 11.681147706607396 0.0 27 0.0 0.0 0.0 11.988280460699132 0.0 28 0.0 0.0 0.0 12.333299656496262 0.0 29 0.0 0.0 0.0 12.658617902606586 0.0 30 0.0 0.0 0.0 13.029905031319458 0.0 31 0.0 0.0 0.0 13.402707617700546 0.0 32 0.0 0.0 0.0 13.775510204081632 0.0 33 0.0 0.0 0.0 14.136189129116993 0.0 34 0.0 0.0 0.0 14.510507173166296 0.0 35 0.0 0.0 0.0 14.88785613255203 0.0 36 0.0 0.0 0.0 15.262174176601334 0.0 37 0.0 0.0 0.0 15.627399474641342 0.0 38 0.0 0.0 0.0 15.985552636896342 0.0 39 0.0 0.0 0.0 16.36593251161851 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATATG 20 7.0191285E-4 45.0 1 CGTGGCG 20 7.0191285E-4 45.0 27 AAATCGA 20 7.0191285E-4 45.0 34 TATGGGT 20 7.0191285E-4 45.0 4 CAACCGT 20 7.0191285E-4 45.0 40 TCAGACG 25 3.879075E-5 45.0 22 AATCTCG 20 7.0191285E-4 45.0 18 CTATTGG 20 7.0191285E-4 45.0 2 CTCGAAC 20 7.0191285E-4 45.0 13 ATAACGG 20 7.0191285E-4 45.0 2 ACCCGCT 20 7.0191285E-4 45.0 34 CGGTAGT 25 3.879075E-5 45.0 12 GTAACGG 25 3.879075E-5 45.0 2 CACCCAT 45 3.8198777E-10 45.0 31 TAACGGG 60 3.6379788E-12 41.250004 3 CTATCTC 55 6.002665E-11 40.909092 5 ACGGGCT 50 1.0713848E-9 40.5 5 AACGGGA 45 1.9144863E-8 40.0 4 TAGGGCG 45 1.9144863E-8 40.0 5 CATACGA 45 1.9144863E-8 40.0 18 >>END_MODULE