SRR2936333.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936333.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	226765
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3050	1.3450047405904793	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	681	0.30031089453839876	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	521	0.2297532688025048	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCG	426	0.18785967852181773	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGC	388	0.17110224240954292	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	341	0.15037593984962408	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGGCGG	20	7.021299E-4	45.0	2
CGGTTTA	20	7.021299E-4	45.0	1
TAGCGGA	20	7.021299E-4	45.0	1
CGACCCC	20	7.021299E-4	45.0	20
ACGGGCT	25	3.880872E-5	45.0	5
TATTGCG	20	7.021299E-4	45.0	1
TACGAAT	25	3.880872E-5	45.0	12
ACTACTA	20	7.021299E-4	45.0	23
AGCTCGG	20	7.021299E-4	45.0	2
TAGTGCG	20	7.021299E-4	45.0	1
TAAGCGG	25	3.880872E-5	45.0	2
CGTTTTA	225	0.0	43.0	1
CGTTTTT	1190	0.0	42.542015	1
GCACGGG	80	0.0	42.1875	3
ACGAGCG	65	0.0	41.53846	16
GGCGATT	80	0.0	39.375	8
CGGTTTT	75	0.0	39.000004	1
ACAACGA	70	0.0	38.571426	13
AGCGACT	70	0.0	38.571426	19
GCGATCA	35	6.2261333E-6	38.571426	9