SRR2936330.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936330.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	200799
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3352	1.6693310225648534	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	575	0.2863560077490426	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	348	0.17330763599420315	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	244	0.1215145493752459	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGAG	25	3.8792725E-5	45.0	14
GGGTCGT	20	7.0193666E-4	45.0	8
GGGTACG	25	3.8792725E-5	45.0	7
ACTTCGG	20	7.0193666E-4	45.0	41
CGTAGGA	20	7.0193666E-4	45.0	4
GAGCGCT	20	7.0193666E-4	45.0	36
CGGGCTC	20	7.0193666E-4	45.0	6
CGAATAT	25	3.8792725E-5	45.0	14
GCGATTA	20	7.0193666E-4	45.0	9
CGGTGGG	20	7.0193666E-4	45.0	3
CGAGCGA	25	3.8792725E-5	45.0	17
AGCCTTC	20	7.0193666E-4	45.0	39
CACAACG	25	3.8792725E-5	45.0	12
GCGCTTG	20	7.0193666E-4	45.0	38
CGCTTGC	20	7.0193666E-4	45.0	39
CCTCTCG	25	3.8792725E-5	45.0	31
CGTTTTT	1200	0.0	43.3125	1
CGTTTTA	215	0.0	41.860466	1
TAACGGG	60	3.6379788E-12	41.249996	3
CATACGA	55	6.002665E-11	40.909092	18