SRR2936325.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936325.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	164052
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC	628	0.3828054519298759	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCG	601	0.3663472557481774	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGC	486	0.29624753127057274	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	382	0.23285299782995636	No Hit
GCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	215	0.1310560066320435	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCCGAT	20	7.015597E-4	45.0	8
ACGGGCG	20	7.015597E-4	45.0	5
ATCGTTG	25	3.8761493E-5	45.0	23
CTGCATA	20	7.015597E-4	45.0	11
GCGATTC	20	7.015597E-4	45.0	8
ATGCGCG	20	7.015597E-4	45.0	1
AAAGCCG	20	7.015597E-4	45.0	27
ACGAAGA	20	7.015597E-4	45.0	33
ACAACGA	30	2.1540982E-6	44.999996	13
GAGCGAC	30	2.1540982E-6	44.999996	18
TTACACG	55	1.8189894E-12	44.999996	34
ACAAGCG	65	0.0	41.538464	14
ATGGGAC	60	3.6379788E-12	41.249996	5
GTCTTAC	60	3.6379788E-12	41.249996	31
AACGGGA	50	1.0695658E-9	40.5	4
CGGTAGT	50	1.0695658E-9	40.5	12
TCCGCCC	45	1.9110303E-8	40.0	35
ACGGGAT	45	1.9110303E-8	40.0	5
CGCCCAA	45	1.9110303E-8	40.0	37
GGGTACC	40	3.4341065E-7	39.375	7