SRR2936321.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936321.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	88201
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCG	1258	1.4262876838131087	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGC	1110	1.2584891327762724	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTC	992	1.1247038015442001	No Hit
GCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	281	0.3185904921712906	TruSeq Adapter, Index 20 (95% over 21bp)
GAATGAAACCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCG	256	0.2902461423339871	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCT	225	0.2550991485357309	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTC	217	0.24602895658779378	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	215	0.2437614086008095	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGC	212	0.2403600866203331	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTT	195	0.22108592873096677	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT	175	0.19841044886112405	No Hit
GAATCTATCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTC	153	0.17346742100429702	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	144	0.16326345506286777	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	114	0.12925023525810364	TruSeq Adapter, Index 20 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGCT	92	0.10430720740127664	TruSeq Adapter, Index 22 (95% over 22bp)
GAATGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTT	91	0.1031734334077845	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCCTAA	20	6.99788E-4	45.000004	25
CTCACTA	20	6.99788E-4	45.000004	45
CCTTAAT	20	6.99788E-4	45.000004	23
ATCTATT	20	6.99788E-4	45.000004	15
CTCGTCC	20	6.99788E-4	45.000004	37
TCACCAT	20	6.99788E-4	45.000004	32
CATTGGG	35	1.1949487E-7	45.000004	3
GCTATCT	20	6.99788E-4	45.000004	4
GACCGAT	35	1.1949487E-7	45.000004	9
CATCTAG	20	6.99788E-4	45.000004	39
AGGCGAT	20	6.99788E-4	45.000004	7
ATCGTTG	20	6.99788E-4	45.000004	23
TAGTTGA	20	6.99788E-4	45.000004	11
ACTAGAG	20	6.99788E-4	45.000004	2
CTAGTTG	20	6.99788E-4	45.000004	10
AAGCATG	20	6.99788E-4	45.000004	1
CGGGCTC	20	6.99788E-4	45.000004	6
ACTAATC	20	6.99788E-4	45.000004	10
CGTACAT	20	6.99788E-4	45.000004	35
TCGTACA	20	6.99788E-4	45.000004	34