SRR2936316.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936316.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	131259
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	462	0.35197586451214774	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGC	266	0.2026527704766911	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCG	234	0.17827348981784105	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTC	212	0.16151273436488164	TruSeq Adapter, Index 22 (95% over 21bp)
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	153	0.11656343565012685	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	140	0.10665935288246903	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATGGTC	20	7.0104457E-4	45.0	12
AGGTACC	20	7.0104457E-4	45.0	7
CAACGGG	20	7.0104457E-4	45.0	3
CGTGCGG	20	7.0104457E-4	45.0	2
GGCCGAT	20	7.0104457E-4	45.0	8
CCTCGAT	20	7.0104457E-4	45.0	15
TAGCCGG	20	7.0104457E-4	45.0	2
GTCAAGC	20	7.0104457E-4	45.0	16
TAGGGCG	25	3.8718856E-5	45.0	5
ATGGTCA	25	3.8718856E-5	45.0	13
TAGGCGA	25	3.8718856E-5	45.0	6
GGCGATT	20	7.0104457E-4	45.0	8
CTGGGAC	25	3.8718856E-5	45.0	5
CTAGGAC	20	7.0104457E-4	45.0	5
TCACGTC	25	3.8718856E-5	45.0	39
TCCGGGT	20	7.0104457E-4	45.0	17
CGTTTTA	55	6.002665E-11	40.909092	1
AGGCGAT	50	1.0659278E-9	40.5	7
ATCTATC	45	1.9059371E-8	40.000004	3
GGCGATG	90	0.0	40.000004	8