##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936315.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 85588 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.896141982520913 31.0 31.0 34.0 30.0 34.0 2 31.999976632238162 33.0 31.0 34.0 30.0 34.0 3 31.916401832032527 33.0 31.0 34.0 30.0 34.0 4 35.667698742814416 37.0 35.0 37.0 33.0 37.0 5 35.76379866336402 37.0 35.0 37.0 35.0 37.0 6 35.72695938682993 37.0 35.0 37.0 35.0 37.0 7 27.004147777725848 35.0 18.0 37.0 0.0 37.0 8 31.182291910080853 35.0 25.0 37.0 17.0 37.0 9 35.81602561106697 38.0 32.0 39.0 32.0 39.0 10 36.658199747628174 37.0 35.0 39.0 33.0 39.0 11 37.014826844884794 39.0 37.0 39.0 34.0 39.0 12 37.05441183343459 39.0 37.0 39.0 33.0 39.0 13 36.949233537411786 39.0 37.0 39.0 33.0 39.0 14 38.13235500303781 40.0 37.0 41.0 33.0 41.0 15 38.187234191709116 40.0 37.0 41.0 33.0 41.0 16 38.15139972893396 40.0 37.0 41.0 33.0 41.0 17 38.021591811936254 40.0 37.0 41.0 33.0 41.0 18 37.93869467682386 40.0 37.0 41.0 33.0 41.0 19 37.82839884095901 40.0 37.0 41.0 33.0 41.0 20 37.90944992288639 40.0 36.0 41.0 33.0 41.0 21 37.86848623638828 40.0 36.0 41.0 33.0 41.0 22 37.8615109594803 40.0 36.0 41.0 33.0 41.0 23 37.86700238351171 40.0 36.0 41.0 33.0 41.0 24 37.80993830910875 40.0 36.0 41.0 33.0 41.0 25 37.755211010889376 40.0 36.0 41.0 33.0 41.0 26 37.567007057064075 39.0 36.0 41.0 33.0 41.0 27 37.436661681544145 39.0 36.0 41.0 33.0 41.0 28 37.43400944057578 39.0 36.0 41.0 33.0 41.0 29 37.41495303079871 39.0 36.0 41.0 32.0 41.0 30 37.29062485395149 39.0 36.0 41.0 32.0 41.0 31 37.1868953591625 39.0 35.0 41.0 32.0 41.0 32 37.00038556807029 39.0 35.0 41.0 31.0 41.0 33 36.902170865074545 39.0 35.0 41.0 31.0 41.0 34 36.782364350142544 39.0 35.0 41.0 31.0 41.0 35 36.550042061971304 39.0 35.0 41.0 30.0 41.0 36 36.406762630275274 39.0 35.0 41.0 30.0 41.0 37 36.22424872645698 39.0 35.0 40.0 30.0 41.0 38 36.192550357526756 39.0 35.0 40.0 30.0 41.0 39 36.19274898350236 39.0 35.0 40.0 30.0 41.0 40 35.91203206056924 39.0 35.0 40.0 28.0 41.0 41 35.7429429359256 38.0 35.0 40.0 27.0 41.0 42 35.63024022059167 38.0 35.0 40.0 27.0 41.0 43 35.60292330700565 38.0 35.0 40.0 27.0 41.0 44 35.42052624199654 38.0 34.0 40.0 26.0 41.0 45 35.36092676543441 38.0 34.0 40.0 26.0 41.0 46 35.12074122540543 38.0 34.0 40.0 25.0 41.0 47 34.85368275926532 38.0 34.0 40.0 23.0 41.0 48 34.725884469785484 38.0 34.0 40.0 23.0 41.0 49 34.506075618077304 38.0 33.0 40.0 23.0 41.0 50 34.28433892601767 37.0 33.0 40.0 22.0 41.0 51 31.87339346637379 35.0 29.0 39.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 10.0 10 5.0 11 8.0 12 4.0 13 2.0 14 2.0 15 3.0 16 10.0 17 16.0 18 28.0 19 54.0 20 121.0 21 180.0 22 232.0 23 363.0 24 548.0 25 743.0 26 993.0 27 1159.0 28 1332.0 29 1497.0 30 1912.0 31 2338.0 32 2916.0 33 4029.0 34 6023.0 35 7511.0 36 8010.0 37 12560.0 38 15755.0 39 17216.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.86259756040567 20.44562321820816 23.34906762630275 11.342711595083422 2 30.39327943169603 28.67458054867505 23.926251343646303 17.005888675982614 3 32.18324998831612 27.198906388746085 24.523297658550263 16.094545964387528 4 29.963312613917836 24.93690704304342 27.773753329906057 17.326027013132684 5 27.37533299060616 29.42001215123615 22.603636023741647 20.601018834416042 6 24.67518811048278 37.123194840398185 24.483572463429454 13.718044585689581 7 57.515072206384076 28.148805907370196 9.398513810347245 4.93760807589849 8 74.98364256671496 9.039818666168156 10.689582651773613 5.286956115343273 9 66.54320699163434 10.88002991073515 12.613917838949384 9.962845258681122 10 39.28938636257419 26.95938682992943 19.429125578352107 14.322101229144272 11 31.044071598822264 26.968733934663735 23.942608776931344 18.04458568958265 12 30.290461279618636 22.67490769734075 29.077674440342104 17.956956582698506 13 24.55133897275319 26.650932373697245 29.83011637145394 18.967612282095622 14 18.90101416086367 31.858438098798896 27.233958031499743 22.006589708837687 15 17.745478338084776 27.61134738514745 36.86381268402113 17.77936159274665 16 20.24933401878768 27.128803103238774 32.04888535776043 20.572977520213115 17 20.134831985792403 26.425433471982053 29.306678506332663 24.13305603589288 18 20.353320558956863 28.786745805486753 29.22722811609104 21.632705519465347 19 24.516287329999535 28.446744870776275 26.563303266813104 20.473664532411085 20 26.585502640557085 27.190727672103566 28.498153946814973 17.725615740524372 21 23.781371220264525 28.99121372154975 26.906809365798946 20.320605692386785 22 21.02514371173529 27.330934243118193 26.38570827686124 25.258213768285277 23 22.059167172968174 28.520353320558954 28.11141748843296 21.309062018039914 24 22.933121465626023 24.939243819226995 28.69561153432724 23.43202318081974 25 20.543767817918397 29.566060662709724 27.299387764639903 22.590783754731973 26 21.099920549609756 29.966817778193207 26.854231901668456 22.079029770528578 27 22.777725849418143 30.931906342010564 26.456979950460347 19.833387858110953 28 18.750292097022946 29.088189933168202 30.515960181333835 21.64555778847502 29 23.028929289152686 28.106743936065804 27.834509510679066 21.029817264102444 30 20.77978221245969 30.77651072580268 26.41725475533953 22.02645230639809 31 23.512641959153154 28.720147684254805 26.035191849324672 21.732018507267373 32 24.467215030144413 31.343178950320137 25.96275178763378 18.22685423190167 33 22.776557461326355 31.05458709164836 24.88549796700472 21.283357480020566 34 24.369070430434174 27.84619339159695 27.50736084497827 20.277375332990605 35 22.76954713277562 27.739870075244195 27.03065850352853 22.459924288451653 36 25.55848950787494 28.710800579520495 26.606533626209284 19.12417628639529 37 21.80913212132542 31.123521989063885 29.46791606299949 17.599429826611207 38 21.18287610412675 30.128055334860026 26.94069262046081 21.748375940552414 39 25.123849137729586 27.183717343552832 27.128803103238774 20.563630415478805 40 23.85731644623078 26.69182595690985 30.264756741599292 19.186100855260083 41 21.94933869234005 27.011964294059915 27.949011543674345 23.08968546992569 42 21.894424452025984 26.64275365705473 30.28345095106791 21.17937093985138 43 25.07244006169089 26.191755853624336 27.078562415291863 21.657241669392903 44 21.991400663644438 28.318222180679538 27.71650231340842 21.97387484226761 45 21.30088330139739 26.70818339019489 27.024816563069585 24.966116745338134 46 22.92727952516708 29.181660980511285 26.025844744590366 21.865214749731273 47 21.08356311632472 26.26419591531523 31.581530121045002 21.070710847315045 48 22.152638220311257 25.585362433986074 29.596438753096226 22.66556059260644 49 20.28321727344955 25.073608449782682 31.579193344861427 23.063980931906343 50 19.79132588680656 26.552787773987006 29.020423423844466 24.635462915361966 51 20.491190353787914 25.87161751647427 26.9523765013787 26.684815628359114 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 45.0 1 121.0 2 197.0 3 347.5 4 498.0 5 369.5 6 241.0 7 210.5 8 180.0 9 186.5 10 193.0 11 193.5 12 194.0 13 208.5 14 223.0 15 236.5 16 250.0 17 256.5 18 263.0 19 242.5 20 222.0 21 307.0 22 392.0 23 439.0 24 486.0 25 616.0 26 903.5 27 1061.0 28 1223.0 29 1385.0 30 1604.5 31 1824.0 32 2054.0 33 2284.0 34 2475.0 35 2666.0 36 2793.0 37 2920.0 38 3388.0 39 3856.0 40 4334.0 41 4812.0 42 5582.0 43 6352.0 44 8074.5 45 9797.0 46 8885.0 47 7973.0 48 7588.5 49 7204.0 50 6244.5 51 5285.0 52 4760.5 53 4236.0 54 3830.0 55 3424.0 56 3321.5 57 3219.0 58 3236.5 59 3254.0 60 3202.5 61 3151.0 62 2836.0 63 2521.0 64 2080.0 65 1639.0 66 1269.5 67 900.0 68 777.0 69 654.0 70 540.0 71 426.0 72 343.5 73 261.0 74 211.5 75 130.0 76 98.0 77 72.5 78 47.0 79 34.5 80 22.0 81 14.0 82 6.0 83 6.5 84 7.0 85 6.0 86 5.0 87 4.5 88 4.0 89 2.5 90 1.0 91 0.5 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 85588.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.936159274664675 #Duplication Level Percentage of deduplicated Percentage of total 1 73.48312622773523 38.899144739916814 2 10.311872337607875 10.917418329672383 3 5.228772595846117 8.303734168341355 4 3.2776392168980513 6.940225265224097 5 2.2292361003818395 5.9003598635322705 6 1.609022888295407 5.110529513483199 7 1.1499326814840973 4.261111370752909 8 0.8254795064780277 3.4958171706313967 9 0.5606197717791953 2.670935177828668 >10 1.2779482199218664 9.294527270178063 >50 0.024278809014059637 0.9826143851941862 >100 0.017657315646588827 1.8425480207505724 >500 0.004414328911647207 1.381034724494088 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCG 616 0.7197270645417582 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGC 566 0.6613076599523298 No Hit GAATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC 498 0.5818572697107071 No Hit GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 244 0.2850866943964107 TruSeq Adapter, Index 15 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 220 0.2570453801934851 No Hit GAATGACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCT 153 0.17876337804365097 No Hit GAATGAAACCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCG 127 0.1483852876571482 No Hit GAATGAAACGGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGC 122 0.14254334719820536 No Hit CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 108 0.12618591391316542 TruSeq Adapter, Index 15 (95% over 22bp) GAATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTT 105 0.1226807496377997 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 100 0.11683880917885685 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTC 92 0.1074917044445483 No Hit GAATCTATCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC 88 0.10281815207739402 No Hit CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT 87 0.10164976398560545 TruSeq Adapter, Index 21 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.16824788521755385 0.0 2 0.0 0.0 0.0 1.0468757302425573 0.0 3 0.0 0.0 0.0 1.3658456793008367 0.0 4 0.0 0.0 0.0 1.8074963779969155 0.0 5 0.0 0.0 0.0 3.598635322708791 0.0 6 0.0 0.0 0.0 4.206197130438847 0.0 7 0.0 0.0 0.0 4.971491330560359 0.0 8 0.0 0.0 0.0 6.03939804645511 0.0 9 0.0 0.0 0.0 6.386409309716315 0.0 10 0.0 0.0 0.0 8.272187689863065 0.0 11 0.0 0.0 0.0 9.469785483946348 0.0 12 0.0 0.0 0.0 11.339206430808057 0.0 13 0.0 0.0 0.0 11.808898443707061 0.0 14 0.0 0.0 0.0 12.028555404963313 0.0 15 0.0 0.0 0.0 12.473711267934757 0.0 16 0.0 0.0 0.0 13.292751320278544 0.0 17 0.0 0.0 0.0 14.149179791559565 0.0 18 0.0 0.0 0.0 15.081553488806842 0.0 19 0.0 0.0 0.0 15.642379772865356 0.0 20 0.0 0.0 0.0 16.142449876150863 0.0 21 0.0 0.0 0.0 16.7722110576249 0.0 22 0.0 0.0 0.0 17.47324391269804 0.0 23 0.0 0.0 0.0 18.154414170210778 0.0 24 0.0 0.0 0.0 18.703556573351403 0.0 25 0.0 0.0 0.0 19.15689115296537 0.0 26 0.0 0.0 0.0 19.582184418376407 0.0 27 0.0 0.0 0.0 20.048371267000046 0.0 28 0.0 0.0 0.0 20.46081226340141 0.0 29 0.0 0.0 0.0 20.964387530962284 0.0 30 0.0 0.0 0.0 21.503014441276814 0.0 31 0.0 0.0 0.0 22.07786138243679 0.0 32 0.0 0.0 0.0 22.579099873814087 0.0 33 0.0 0.0 0.0 23.011403467775857 0.0 34 0.0 0.0 0.0 23.496284525868113 0.0 35 0.0 0.0 0.0 23.98116558396037 0.0 36 0.0 0.0 0.0 24.48824601579661 0.0 37 0.0 0.0 0.0 25.015189045193253 0.0 38 0.0 0.0 0.0 25.474365565266158 0.0 39 0.0 0.0 0.0 25.92302659251297 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCTATC 30 2.1419437E-6 45.000004 3 CGAAAGG 30 2.1419437E-6 45.000004 3 GGGGTAG 30 2.1419437E-6 45.000004 7 CAAAAAG 20 6.996695E-4 45.0 29 ACCTGGG 20 6.996695E-4 45.0 2 TACGGGC 20 6.996695E-4 45.0 4 GTTACGG 20 6.996695E-4 45.0 2 GCGGGAT 40 6.688424E-9 45.0 5 TTACGGG 35 1.1943848E-7 45.0 3 GCTACAC 20 6.996695E-4 45.0 9 GGATTGA 20 6.996695E-4 45.0 8 ATTGCGG 20 6.996695E-4 45.0 2 CCAGTGG 20 6.996695E-4 45.0 2 AGGGAGC 25 3.8605078E-5 45.0 6 CTATCTC 55 6.002665E-11 40.90909 5 CGGGGGA 50 1.0568328E-9 40.5 6 AGGGGCC 45 1.8926585E-8 40.000004 6 ATGGGAC 40 3.4084587E-7 39.375 5 ATGAAAC 70 0.0 38.571426 3 GGTAGGG 35 6.1807623E-6 38.571426 3 >>END_MODULE