SRR2936314.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936314.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	152468
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	274	0.1797098407534696	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	258	0.1692158354539969	No Hit
GCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGC	154	0.10100480100742452	Illumina PCR Primer Index 5 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGA	45	3.8016879E-10	45.000004	4
ATGCCGC	25	3.8748498E-5	45.000004	41
ACAACGA	20	7.014027E-4	45.0	13
CATTCTA	20	7.014027E-4	45.0	45
CAGGGTA	40	6.7484507E-9	45.0	5
GAGCGAC	20	7.014027E-4	45.0	18
GCGGGTC	20	7.014027E-4	45.0	5
CGGGAAC	20	7.014027E-4	45.0	6
TTCGGGA	35	1.2026794E-7	45.0	4
GGACCCA	20	7.014027E-4	45.0	8
ATTTGGA	20	7.014027E-4	45.0	16
TGCGGGA	80	0.0	42.1875	4
CATACGA	65	0.0	41.53846	18
ACATACG	65	0.0	41.53846	17
CAAGCGA	45	1.909575E-8	40.000004	15
CGAGATA	45	1.909575E-8	40.000004	19
TCGACAC	40	3.4319783E-7	39.375	34
GTTATGG	40	3.4319783E-7	39.375	2
CGTTTTT	180	0.0	38.750004	1
CCCTAGC	35	6.2127074E-6	38.571426	21