SRR2936312.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936312.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	122466
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCG	762	0.6222135123217872	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC	668	0.5454575147387847	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGC	536	0.43767249685627035	No Hit
GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	287	0.234350758577891	TruSeq Adapter, Index 23 (95% over 23bp)
GCCCTGCTAGAGGACTTTCGTCTGTATCTATGCTCTGCCCCATGCAGCTCC	223	0.1820913559681871	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	193	0.15759476099488837	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCG	181	0.1477961230055689	No Hit
GAATCTATCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC	181	0.1477961230055689	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCT	163	0.13309816602158966	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTT	145	0.11840020903761043	No Hit
CTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCT	133	0.10860157104829096	TruSeq Adapter, Index 22 (95% over 22bp)
GAATGATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTC	129	0.10533535838518446	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGC	124	0.10125259255630134	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGCGAT	30	2.1495925E-6	45.000004	7
ATGGGCG	20	7.008595E-4	45.0	5
CACGGGA	25	3.870354E-5	45.0	4
TTTCGTC	50	2.1827873E-11	45.0	16
TAAGTAT	20	7.008595E-4	45.0	30
TACGGCT	55	1.8189894E-12	45.0	7
ATCCGGT	20	7.008595E-4	45.0	43
AATGCCG	20	7.008595E-4	45.0	17
TCGTGTC	20	7.008595E-4	45.0	31
TGATTGG	25	3.870354E-5	45.0	2
GTATCTA	50	2.1827873E-11	45.0	24
CTTTCGT	50	2.1827873E-11	45.0	15
GGACCAC	25	3.870354E-5	45.0	8
GGCGATT	35	1.2000783E-7	45.0	8
TCCTTAA	20	7.008595E-4	45.0	23
CGTTTTA	35	1.2000783E-7	45.0	1
GCCGTTA	20	7.008595E-4	45.0	44
GTAGTAG	25	3.870354E-5	45.0	1
TGCCGTT	20	7.008595E-4	45.0	43
TATCTCT	60	3.6379788E-12	41.250004	6