##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936312.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 122466 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.93087060898535 31.0 31.0 34.0 30.0 34.0 2 32.04338346969771 33.0 31.0 34.0 30.0 34.0 3 31.961328042068818 33.0 31.0 34.0 30.0 34.0 4 35.70902944490716 37.0 35.0 37.0 35.0 37.0 5 35.784527950614866 37.0 35.0 37.0 35.0 37.0 6 35.76244018748061 37.0 35.0 37.0 35.0 37.0 7 26.87011905345157 35.0 11.0 37.0 0.0 37.0 8 31.145656753711233 35.0 19.0 37.0 17.0 37.0 9 35.881893750102066 39.0 32.0 39.0 32.0 39.0 10 36.617355020985414 38.0 35.0 39.0 32.0 39.0 11 36.932364901278724 39.0 37.0 39.0 33.0 39.0 12 36.957865856645924 39.0 37.0 39.0 33.0 39.0 13 36.920769846324696 39.0 37.0 39.0 33.0 39.0 14 38.09107834011073 40.0 37.0 41.0 33.0 41.0 15 38.163114660395536 40.0 37.0 41.0 33.0 41.0 16 38.119772018356116 40.0 37.0 41.0 33.0 41.0 17 37.980198585729916 40.0 37.0 41.0 33.0 41.0 18 37.87998301569415 40.0 36.0 41.0 33.0 41.0 19 37.76186860026456 40.0 36.0 41.0 33.0 41.0 20 37.84970522430716 40.0 36.0 41.0 33.0 41.0 21 37.76088057093397 40.0 36.0 41.0 33.0 41.0 22 37.77480280241046 40.0 36.0 41.0 33.0 41.0 23 37.774917119853676 39.0 36.0 41.0 33.0 41.0 24 37.717096990185034 40.0 36.0 41.0 33.0 41.0 25 37.60623356686754 39.0 36.0 41.0 33.0 41.0 26 37.46210376757631 39.0 36.0 41.0 33.0 41.0 27 37.3153773292179 39.0 36.0 41.0 32.0 41.0 28 37.22067349305113 39.0 35.0 41.0 32.0 41.0 29 37.21961197393562 39.0 36.0 41.0 32.0 41.0 30 37.15842764522398 39.0 35.0 41.0 32.0 41.0 31 37.01686182287329 39.0 35.0 41.0 31.0 41.0 32 36.9009521009913 39.0 35.0 41.0 31.0 41.0 33 36.80160207731125 39.0 35.0 41.0 31.0 41.0 34 36.689415837865205 39.0 35.0 41.0 30.0 41.0 35 36.603694086521976 39.0 35.0 41.0 30.0 41.0 36 36.42059837015988 39.0 35.0 40.0 30.0 41.0 37 36.33958813058318 39.0 35.0 40.0 30.0 41.0 38 36.18068688452305 39.0 35.0 40.0 30.0 41.0 39 36.19229010500874 39.0 35.0 40.0 30.0 41.0 40 36.0107295085983 38.0 35.0 40.0 29.0 41.0 41 35.93456142929466 38.0 35.0 40.0 29.0 41.0 42 35.84444662191955 38.0 35.0 40.0 29.0 41.0 43 35.79333039374194 38.0 35.0 40.0 28.0 41.0 44 35.5806427906521 38.0 34.0 40.0 28.0 41.0 45 35.4851713945095 38.0 34.0 40.0 27.0 41.0 46 35.35452288798524 38.0 34.0 40.0 27.0 41.0 47 35.18374895889471 38.0 34.0 40.0 26.0 41.0 48 35.05136119412735 38.0 34.0 40.0 26.0 41.0 49 34.86774288373916 37.0 34.0 40.0 25.0 41.0 50 34.61420312576552 37.0 34.0 40.0 24.0 41.0 51 32.25629154214231 35.0 30.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 8.0 10 7.0 11 3.0 12 2.0 13 2.0 14 4.0 15 8.0 16 11.0 17 28.0 18 59.0 19 108.0 20 155.0 21 270.0 22 356.0 23 546.0 24 693.0 25 892.0 26 1158.0 27 1412.0 28 1744.0 29 2178.0 30 2622.0 31 3403.0 32 4361.0 33 5994.0 34 8836.0 35 11049.0 36 12119.0 37 18599.0 38 22976.0 39 22857.0 40 4.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.40388352685643 20.143550046543528 24.25979455522349 12.192771871376545 2 29.595969493573726 26.720069243708455 26.082341221236916 17.6016200414809 3 30.788137115607594 25.60710727875492 26.1492985808306 17.455457024806886 4 28.145771071154442 24.218150343768883 28.43156467917626 19.204513905900413 5 26.077441902242253 28.175166985122402 25.581794130615844 20.165596982019498 6 26.265249130370876 34.87253605082227 24.55946956706351 14.30274525174334 7 60.535985498015776 27.41332288145281 7.581696144235951 4.468995476295461 8 81.11557493508403 6.01473061911061 8.252902846504336 4.61679159930103 9 75.48625741021998 7.169336795518756 9.614096973853968 7.730308820407298 10 43.740303431156406 23.8751980141427 16.80139793901981 15.583100615681087 11 29.355902862835396 24.47291493149119 24.67133735077491 21.4998448548985 12 26.79110936913102 21.27120996848105 29.818071954664973 22.11960870772296 13 23.252984501820915 23.610634788431074 32.146065030294125 20.99031567945389 14 19.504188917740432 26.662093968938315 31.72635670308494 22.10736041023631 15 18.359381379321608 24.755442326849902 35.97814903728382 20.907027256544673 16 21.682752764032468 25.031437296882398 30.397008149200595 22.88880178988454 17 22.384988486600363 23.831104143190764 28.66591543775415 25.11799193245472 18 23.331373605735468 23.757614358270867 30.372511554227295 22.53850048176637 19 24.882824620711055 25.63813629905443 26.822138389430535 22.656900690803976 20 26.070909476916043 24.88527428020838 27.952247970865386 21.091568272010193 21 25.659366681364627 24.637858670978066 29.85400029395914 19.848774353698172 22 23.85151797233518 22.667515881959073 28.44217987033136 25.03878627537439 23 22.590759884376073 25.14738784642268 28.52955105906946 23.732301210131794 24 24.33246778697761 22.42663269805497 28.550781441379648 24.690118073587772 25 21.84606339718779 26.687407117077395 27.645223980533373 23.821305505201444 26 22.21351232178727 26.46857086864926 26.551859291558472 24.766057518004995 27 22.845524472098376 26.462038443323046 27.726879297111033 22.965557787467542 28 20.24970195809449 24.722780200218835 31.22009374030343 23.80742410138324 29 22.014273349337778 23.86050005715872 29.511864517498736 24.61336207600477 30 23.069260039521172 24.98571031959891 28.343376937272385 23.60165270360753 31 23.31749220191727 24.776672709160096 28.00859013930397 23.89724494961867 32 24.858328025737755 25.573628598958077 27.514575474009114 22.053467901295054 33 22.909215619028956 23.983799585190994 26.69148988290628 26.415494912873775 34 21.739094932471055 23.937256054741724 30.223898878055948 24.099750134731273 35 22.498489376643313 25.21679486551369 27.410873221955484 24.873842535887512 36 24.428821060539253 23.071709699018502 28.5491483350481 23.95032090539415 37 23.48570215406725 24.481897016314733 29.767445658386816 22.2649551712312 38 21.23936439501576 25.915764375418483 26.89154540852155 25.95332582104421 39 22.539317034932143 23.51019874904055 29.616383322718143 24.334100893309163 40 22.67078209462218 23.969101628207014 28.885568239348064 24.474548037822743 41 21.305505201443665 24.64684075580161 27.444351901752324 26.6033021410024 42 22.495223163980206 24.287557362859896 27.96939558734669 25.247823885813204 43 23.11825322946777 23.596753384612875 28.159652474972646 25.125340910946715 44 22.084496921594564 23.095389740826025 28.953342152107524 25.866771185471887 45 21.552920810673985 23.211340290366305 28.03961915960348 27.196119739356227 46 23.69392321134029 23.86539937615338 28.13270622050202 24.30797119200431 47 21.21078503421358 23.544493982003168 30.99799127921219 24.246729704571067 48 21.98324432903826 23.58205542762889 29.29792758806526 25.136772655267585 49 21.552104257508205 22.003658158182677 31.17436676301994 25.269870821289175 50 21.148726993614556 23.47835317557526 29.620466088547026 25.75245374226316 51 20.911110022373556 23.72985155063446 27.90652099358189 27.45251743341009 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 47.0 1 142.0 2 237.0 3 374.0 4 511.0 5 369.0 6 227.0 7 213.5 8 200.0 9 207.0 10 214.0 11 229.0 12 244.0 13 225.5 14 207.0 15 221.5 16 236.0 17 213.0 18 190.0 19 205.0 20 220.0 21 262.0 22 304.0 23 413.5 24 523.0 25 629.5 26 790.0 27 844.0 28 1087.0 29 1330.0 30 1464.5 31 1599.0 32 1822.0 33 2045.0 34 2378.0 35 2711.0 36 3277.5 37 3844.0 38 4018.5 39 4193.0 40 4785.0 41 5377.0 42 6105.0 43 6833.0 44 7863.5 45 8894.0 46 10946.0 47 12998.0 48 12178.0 49 11358.0 50 10736.0 51 10114.0 52 9042.5 53 7971.0 54 7539.0 55 7107.0 56 6844.5 57 6582.0 58 6190.5 59 5799.0 60 5387.0 61 4975.0 62 4559.0 63 4143.0 64 3625.0 65 3107.0 66 2663.0 67 2219.0 68 1885.5 69 1552.0 70 1303.0 71 1054.0 72 932.5 73 811.0 74 646.0 75 349.5 76 218.0 77 155.5 78 93.0 79 75.5 80 58.0 81 44.5 82 31.0 83 19.5 84 8.0 85 8.0 86 8.0 87 6.0 88 4.0 89 4.5 90 5.0 91 4.5 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 122466.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.4055329642513 #Duplication Level Percentage of deduplicated Percentage of total 1 69.91078812619872 32.442473829471034 2 10.159947915750207 9.429555958388452 3 5.321039573472225 7.40777031992553 4 3.617743836990375 6.715333235346953 5 2.6482025655012227 6.144562572469094 6 1.9760342066829724 5.50193523100289 7 1.5027009906565079 4.881354825012656 8 1.226443314388274 4.553100452370454 9 1.0047333321602645 4.196266718926069 >10 2.6006932835952212 15.317720836803684 >50 0.0052788091006668895 0.17392582431042083 >100 0.021115236402667558 1.6306566720559177 >500 0.0052788091006668895 1.6053435239168423 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCG 762 0.6222135123217872 No Hit GAATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC 668 0.5454575147387847 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGC 536 0.43767249685627035 No Hit GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC 287 0.234350758577891 TruSeq Adapter, Index 23 (95% over 23bp) GCCCTGCTAGAGGACTTTCGTCTGTATCTATGCTCTGCCCCATGCAGCTCC 223 0.1820913559681871 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 193 0.15759476099488837 No Hit GAATGAAACCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCG 181 0.1477961230055689 No Hit GAATCTATCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC 181 0.1477961230055689 No Hit GAATGACTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCT 163 0.13309816602158966 No Hit GAATGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTT 145 0.11840020903761043 No Hit CTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCT 133 0.10860157104829096 TruSeq Adapter, Index 22 (95% over 22bp) GAATGATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTC 129 0.10533535838518446 No Hit GAATGAAACGGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGC 124 0.10125259255630134 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.14942922933712213 0.0 2 0.0 0.0 0.0 0.8173697189424003 0.0 3 0.0 0.0 0.0 1.0427383926967484 0.0 4 0.0 0.0 0.0 1.4012052324726862 0.0 5 0.0 0.0 0.0 2.7338199990201364 0.0 6 0.0 0.0 0.0 3.2604967909460587 0.0 7 0.0 0.0 0.0 3.825551581663482 0.0 8 0.0 0.0 0.0 4.695997256381363 0.0 9 0.0 0.0 0.0 4.984240523900511 0.0 10 0.0 0.0 0.0 6.471183838779743 0.0 11 0.0 0.0 0.0 7.513105678310715 0.0 12 0.0 0.0 0.0 8.86613427400258 0.0 13 0.0 0.0 0.0 9.2531804745807 0.0 14 0.0 0.0 0.0 9.437721490046217 0.0 15 0.0 0.0 0.0 9.738213055052015 0.0 16 0.0 0.0 0.0 10.320415462250747 0.0 17 0.0 0.0 0.0 10.911599954273022 0.0 18 0.0 0.0 0.0 11.62363431483024 0.0 19 0.0 0.0 0.0 12.075188215504712 0.0 20 0.0 0.0 0.0 12.49897930854278 0.0 21 0.0 0.0 0.0 13.010141590318945 0.0 22 0.0 0.0 0.0 13.524570084758219 0.0 23 0.0 0.0 0.0 14.021034409550406 0.0 24 0.0 0.0 0.0 14.45544069374357 0.0 25 0.0 0.0 0.0 14.870249701958095 0.0 26 0.0 0.0 0.0 15.20503649992651 0.0 27 0.0 0.0 0.0 15.552888148547352 0.0 28 8.165531657766237E-4 0.0 0.0 15.92605294530727 0.0 29 8.165531657766237E-4 0.0 0.0 16.281253572420102 0.0 30 8.165531657766237E-4 0.0 0.0 16.739339898420788 0.0 31 8.165531657766237E-4 0.0 0.0 17.121486780004247 0.0 32 8.165531657766237E-4 0.0 0.0 17.484036385609066 0.0 33 8.165531657766237E-4 0.0 0.0 17.866183267192525 0.0 34 8.165531657766237E-4 0.0 0.0 18.26629431842307 0.0 35 8.165531657766237E-4 0.0 0.0 18.66558881648784 0.0 36 8.165531657766237E-4 0.0 0.0 19.049368804402853 0.0 37 8.165531657766237E-4 0.0 0.0 19.43069913282054 0.0 38 8.165531657766237E-4 0.0 0.0 19.82509431189065 0.0 39 8.165531657766237E-4 0.0 0.0 20.21867293779498 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGCGAT 30 2.1495925E-6 45.000004 7 ATGGGCG 20 7.008595E-4 45.0 5 CACGGGA 25 3.870354E-5 45.0 4 TTTCGTC 50 2.1827873E-11 45.0 16 TAAGTAT 20 7.008595E-4 45.0 30 TACGGCT 55 1.8189894E-12 45.0 7 ATCCGGT 20 7.008595E-4 45.0 43 AATGCCG 20 7.008595E-4 45.0 17 TCGTGTC 20 7.008595E-4 45.0 31 TGATTGG 25 3.870354E-5 45.0 2 GTATCTA 50 2.1827873E-11 45.0 24 CTTTCGT 50 2.1827873E-11 45.0 15 GGACCAC 25 3.870354E-5 45.0 8 GGCGATT 35 1.2000783E-7 45.0 8 TCCTTAA 20 7.008595E-4 45.0 23 CGTTTTA 35 1.2000783E-7 45.0 1 GCCGTTA 20 7.008595E-4 45.0 44 GTAGTAG 25 3.870354E-5 45.0 1 TGCCGTT 20 7.008595E-4 45.0 43 TATCTCT 60 3.6379788E-12 41.250004 6 >>END_MODULE