SRR2936307.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936307.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	118638
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCG	290	0.24444107284343972	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTC	281	0.2368549705827812	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	249	0.20988216254488445	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	214	0.18038065375343482	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGC	210	0.17700905274869771	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTT	195	0.1643655489809336	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	158	0.13317823968711542	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAAATCG	20	7.0076995E-4	45.0	23
TCGCAAC	25	3.869612E-5	45.0	16
TTAGCGG	25	3.869612E-5	45.0	2
TTTCGCA	25	3.869612E-5	45.0	14
TACGAAT	35	1.1996417E-7	45.0	12
AGACCTA	20	7.0076995E-4	45.0	32
CGGGATT	20	7.0076995E-4	45.0	6
CGAATAT	35	1.1996417E-7	45.0	14
TCCCGGA	20	7.0076995E-4	45.0	39
TTACGGG	40	6.726623E-9	45.0	3
ATTTGGG	20	7.0076995E-4	45.0	3
TCTATCG	20	7.0076995E-4	45.0	30
TCCGCCC	30	2.149016E-6	44.999996	35
ACGGGTT	30	2.149016E-6	44.999996	21
GAACGCA	30	2.149016E-6	44.999996	36
TTTGCCG	30	2.149016E-6	44.999996	26
CCGCCCA	30	2.149016E-6	44.999996	36
CTCCAGA	40	3.4233744E-7	39.375	17
GAATATA	40	3.4233744E-7	39.375	15
AGATTAC	40	3.4233744E-7	39.375	21