SRR2936304.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936304.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	219265
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3891	1.774565024057647	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	681	0.31058308439559434	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTC	668	0.3046541855745331	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCG	501	0.22849063918089982	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTT	434	0.1979340067954302	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGC	417	0.19018083141404235	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	378	0.17239413495085856	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTC	360	0.16418489042938908	No Hit
CGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTG	245	0.11173693932000092	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT	224	0.10215948737828655	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATACGG	30	2.1574415E-6	45.000004	2
CGGGTAT	40	6.7720975E-9	45.0	6
TTAGGCA	20	7.0207904E-4	45.0	5
ATCAGTA	20	7.0207904E-4	45.0	34
CTAAGCG	20	7.0207904E-4	45.0	2
TACGGGC	25	3.88045E-5	45.0	4
ACCACCT	20	7.0207904E-4	45.0	14
CGAGATA	25	3.88045E-5	45.0	19
CGCCGCA	20	7.0207904E-4	45.0	18
CGTTTTA	225	0.0	45.0	1
CGTTTTT	1445	0.0	42.664356	1
ACGGGCT	55	6.002665E-11	40.909092	5
AGGCGAT	50	1.0732037E-9	40.5	7
ATACGGG	85	0.0	39.705883	3
AGCGCAA	40	3.4411823E-7	39.375	43
AACGGGT	35	6.2251875E-6	38.57143	4
ACGCCGG	65	9.094947E-12	38.07692	27
GTAGGGT	65	9.094947E-12	38.07692	4
GGCGATC	30	1.13691116E-4	37.500004	8
ACTCATG	30	1.13691116E-4	37.500004	22