##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936304.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 219265 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.822502451371626 31.0 31.0 34.0 30.0 34.0 2 31.94370282534832 33.0 31.0 34.0 30.0 34.0 3 31.336884591704102 31.0 31.0 34.0 28.0 34.0 4 35.36318153832121 37.0 35.0 37.0 33.0 37.0 5 35.63344355004219 37.0 35.0 37.0 33.0 37.0 6 35.66736141199006 37.0 35.0 37.0 35.0 37.0 7 26.94999201879005 35.0 16.0 37.0 0.0 37.0 8 31.193815702460494 35.0 23.0 37.0 17.0 37.0 9 35.904508243449705 39.0 32.0 39.0 32.0 39.0 10 36.67221854833193 38.0 35.0 39.0 33.0 39.0 11 37.04630926048389 39.0 37.0 39.0 34.0 39.0 12 37.08070599502884 39.0 37.0 39.0 34.0 39.0 13 37.05877363008232 39.0 37.0 39.0 33.0 39.0 14 38.197601076323174 40.0 38.0 41.0 33.0 41.0 15 38.27908238889015 40.0 38.0 41.0 33.0 41.0 16 38.22506555993888 40.0 37.0 41.0 33.0 41.0 17 38.134508471484274 40.0 37.0 41.0 33.0 41.0 18 37.93027614986432 39.0 37.0 41.0 33.0 41.0 19 37.71793491893371 39.0 37.0 41.0 33.0 41.0 20 37.62727293457688 39.0 35.0 41.0 33.0 41.0 21 37.55460287779627 39.0 35.0 41.0 33.0 41.0 22 37.56922445442729 39.0 35.0 41.0 33.0 41.0 23 37.51312338950585 39.0 35.0 41.0 33.0 41.0 24 37.417686361252365 39.0 35.0 41.0 33.0 41.0 25 37.285344218183475 39.0 35.0 41.0 33.0 41.0 26 37.1620276833968 39.0 35.0 41.0 33.0 41.0 27 37.037753403415955 39.0 35.0 41.0 32.0 41.0 28 36.9748751510729 39.0 35.0 41.0 32.0 41.0 29 36.892878480377625 39.0 35.0 41.0 32.0 41.0 30 36.740984653273436 39.0 35.0 41.0 31.0 41.0 31 36.55496773310834 39.0 35.0 40.0 31.0 41.0 32 36.292385925706334 39.0 35.0 40.0 30.0 41.0 33 35.96850842587736 38.0 35.0 40.0 29.0 41.0 34 35.56803411397168 38.0 35.0 40.0 26.0 41.0 35 35.26698287460379 38.0 34.0 40.0 24.0 41.0 36 34.98126467972545 38.0 34.0 40.0 23.0 41.0 37 34.8173306273231 38.0 34.0 40.0 23.0 41.0 38 34.57887487743142 38.0 34.0 40.0 21.0 41.0 39 34.46609353978063 38.0 34.0 40.0 21.0 41.0 40 34.22090620938134 38.0 33.0 40.0 20.0 41.0 41 34.12971062413062 38.0 33.0 40.0 19.0 41.0 42 34.01862586368093 38.0 33.0 40.0 18.0 41.0 43 34.00259047271567 38.0 33.0 40.0 18.0 41.0 44 33.77415456183157 37.0 33.0 40.0 18.0 41.0 45 33.69489886666819 37.0 33.0 40.0 18.0 41.0 46 33.59811643445146 37.0 33.0 40.0 18.0 41.0 47 33.416185893781496 37.0 33.0 40.0 17.0 41.0 48 33.305009919503796 37.0 32.0 40.0 17.0 41.0 49 33.10296216906483 37.0 32.0 40.0 15.0 41.0 50 32.88650263379928 36.0 31.0 40.0 15.0 41.0 51 30.783955487651927 35.0 27.0 39.0 9.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 10.0 9 12.0 10 18.0 11 16.0 12 9.0 13 6.0 14 13.0 15 17.0 16 21.0 17 72.0 18 126.0 19 224.0 20 359.0 21 632.0 22 998.0 23 1521.0 24 2381.0 25 3760.0 26 4712.0 27 4994.0 28 4938.0 29 4962.0 30 5540.0 31 6294.0 32 7753.0 33 10503.0 34 15320.0 35 18798.0 36 20500.0 37 30531.0 38 36864.0 39 37352.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.93553462704946 18.65824458987983 21.88128520283675 20.524935580233965 2 37.215241830661526 23.46384511892003 23.147789204843455 16.173123845574988 3 29.549175655029302 22.87734020477504 31.83681846167879 15.736665678516863 4 25.88694046017376 22.939365607826147 33.61320776229677 17.560486169703328 5 23.399083301028437 27.17579185004447 30.952044329920415 18.473080519006682 6 23.524502314550887 32.01286114975031 31.100266800446946 13.362369735251864 7 54.87971176430347 27.220030556632384 13.48915695619456 4.411100722869587 8 74.23665427678836 5.458691537637106 15.989784051262172 4.314870134312362 9 68.00036485531207 6.954142247964791 17.896153056803414 7.149339839919731 10 38.82106127288897 21.68654368002189 25.33372859325474 14.158666453834401 11 29.33026246779012 23.669076231956765 29.519531160923997 17.481130139329125 12 26.054773903723806 21.12557863772148 33.8631336510615 18.956513807493216 13 23.317902994093906 21.78915923654026 35.58251430916927 19.310423460196567 14 20.00866531366155 24.019793400679543 35.56746402754658 20.40407725811233 15 19.55670079584065 23.75481723029211 38.07903678197615 18.60944519189109 16 22.557179668437737 24.082274872870727 34.250336350990814 19.110209107700726 17 23.060679999087863 23.94591019998632 32.767199507445326 20.22621029348049 18 23.00184708001733 23.7575536451326 33.881376416664764 19.3592228581853 19 23.34709141905913 25.439080564613597 31.79486010079128 19.418967915535994 20 23.42781565685358 25.76380179235172 32.083095797322876 18.725286753471828 21 22.984972521834308 25.512051627026654 33.46863384489089 18.034342006248146 22 22.440425968576836 22.727749526828266 33.309465715002396 21.522358789592502 23 21.085900622534375 23.898022940277748 33.858572959660684 21.157503477527193 24 22.25799831254418 23.134107130641006 33.54206097644403 21.065833580370786 25 22.029963742503362 25.776571728274007 31.882425375686957 20.311039153535678 26 20.53724944701617 24.89134152737555 32.209883018265565 22.361526007342714 27 20.95820126331152 24.68565434519873 32.598453925615125 21.757690465874628 28 19.62967185825371 24.46446081225914 32.938681504116026 22.967185825371125 29 21.131051467402457 23.956855859348277 32.91770232367227 21.994390349576996 30 21.298884910952502 23.662691263995622 33.18951953116092 21.848904293890953 31 21.613116548468746 23.690511481540604 32.022438601692016 22.673933368298634 32 22.867306683693247 23.75709757599252 31.26764417485691 22.107951565457324 33 22.434041000615693 24.090028048252115 30.35915444781429 23.116776503317904 34 20.807242377944497 23.99334139055481 33.442181834766146 21.757234396734546 35 21.633183590632342 24.97753859485098 31.222493329988826 22.166784484527856 36 23.4396734544957 25.759241100950902 29.594782569037463 21.206302875515927 37 22.475999361503206 25.766994276332294 30.05997309192073 21.697033270243768 38 22.247964791462387 26.046108590062257 29.35352199393428 22.35240462454108 39 23.172416938407864 24.891797596515634 29.943219392059838 21.99256607301667 40 23.712858869404602 24.387841196725425 31.14952226757576 20.74977766629421 41 22.085148108453243 25.13989920872004 30.823888901557478 21.95106378126924 42 22.37383987412492 24.94652589332543 30.6022392994778 22.077394933071854 43 22.668004469477573 24.068592798668277 30.34729665017217 22.916106081681985 44 21.812874831824505 24.837525368845917 30.243312886233554 23.106286913096024 45 20.615237269970127 24.95336693042665 29.730691172781793 24.700704626821427 46 21.68517547260165 25.988187809271885 29.457961827012973 22.868674891113493 47 20.743392698333068 24.722595945545343 31.9681663740223 22.565844982099286 48 20.945887396529315 25.05552641780494 30.8033657902538 23.195220395411944 49 21.40423688231136 24.34998745809865 31.289079424440747 22.95669623514925 50 20.316055914076575 24.61040293708526 31.813558935534626 23.259982213303537 51 20.486169703327025 24.644608122591386 30.344560235331674 24.524661938749915 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 102.0 1 229.0 2 356.0 3 3721.0 4 7086.0 5 4838.0 6 2590.0 7 2231.0 8 1872.0 9 1831.5 10 1791.0 11 1685.0 12 1579.0 13 1517.5 14 1456.0 15 1426.0 16 1396.0 17 1279.0 18 1162.0 19 1126.5 20 1091.0 21 1152.0 22 1213.0 23 1296.0 24 1379.0 25 1510.5 26 1913.0 27 2184.0 28 2481.0 29 2778.0 30 3153.0 31 3528.0 32 4080.0 33 4632.0 34 5266.0 35 5900.0 36 6320.0 37 6740.0 38 7181.5 39 7623.0 40 8289.0 41 8955.0 42 9552.0 43 10149.0 44 10872.0 45 11595.0 46 12515.5 47 13436.0 48 16070.0 49 18704.0 50 18043.5 51 17383.0 52 16641.0 53 15899.0 54 14155.0 55 12411.0 56 11301.5 57 10192.0 58 9695.0 59 9198.0 60 8682.0 61 8166.0 62 7577.5 63 6989.0 64 6154.5 65 5320.0 66 4679.5 67 4039.0 68 3597.5 69 3156.0 70 2625.5 71 2095.0 72 1727.5 73 1360.0 74 1091.5 75 655.5 76 488.0 77 387.0 78 286.0 79 257.5 80 229.0 81 188.0 82 147.0 83 113.0 84 79.0 85 56.5 86 34.0 87 25.5 88 17.0 89 12.0 90 7.0 91 6.0 92 5.0 93 4.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 219265.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.98185360549115 #Duplication Level Percentage of deduplicated Percentage of total 1 68.54890750819824 34.26201459891118 2 12.638190614122294 12.633603862267057 3 6.349021974353179 9.520076605805011 4 3.922055025727306 7.8412632051433215 5 2.7479154541048785 6.867295397366839 6 1.7621197339431576 5.284440634637635 7 1.3157870922529558 4.603583447468748 8 0.8794979325684762 3.5167149529575767 9 0.6071996153346229 2.7314066054669093 >10 1.1925352158566187 7.60163961526876 >50 0.017888027126729805 0.6407550064164722 >100 0.014906689272274837 1.6455979350835446 >500 0.002981337854454967 0.918912218504243 >1k 9.937792848183225E-4 1.9326959147027079 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3891 1.774565024057647 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 681 0.31058308439559434 No Hit GAATCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTC 668 0.3046541855745331 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCG 501 0.22849063918089982 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTT 434 0.1979340067954302 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGC 417 0.19018083141404235 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 378 0.17239413495085856 No Hit CGTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTC 360 0.16418489042938908 No Hit CGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTG 245 0.11173693932000092 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT 224 0.10215948737828655 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1067201787791029 0.0 2 0.0 0.0 0.0 0.4145668483342075 0.0 3 0.0 0.0 0.0 0.7009782683054752 0.0 4 0.0 0.0 0.0 0.9714272683738855 0.0 5 0.0 0.0 0.0 2.0500307846669554 0.0 6 0.0 0.0 0.0 2.8513442637903905 0.0 7 0.0 0.0 0.0 3.481631815383212 0.0 8 0.0 0.0 0.0 4.419766036531138 0.0 9 0.0 0.0 0.0 4.9752582491505715 0.0 10 0.0 0.0 0.0 6.076209153307642 0.0 11 0.0 0.0 0.0 6.852438829726586 0.0 12 0.0 0.0 0.0 7.746334344286594 0.0 13 0.0 0.0 0.0 8.071967710304882 0.0 14 0.0 0.0 0.0 8.279023099901945 0.0 15 0.0 0.0 0.0 8.495655941440722 0.0 16 0.0 0.0 0.0 8.796661573894603 0.0 17 0.0 0.0 0.0 9.12229493991289 0.0 18 4.5606914008163637E-4 0.0 0.0 9.529108612865711 0.0 19 4.5606914008163637E-4 0.0 0.0 9.755318906346202 0.0 20 4.5606914008163637E-4 0.0 0.0 10.020295076733634 0.0 21 4.5606914008163637E-4 0.0 0.0 10.305794358424738 0.0 22 4.5606914008163637E-4 0.0 0.0 10.647846213485964 0.0 23 4.5606914008163637E-4 0.0 0.0 10.993546621667845 0.0 24 4.5606914008163637E-4 0.0 0.0 11.276309488518459 0.0 25 4.5606914008163637E-4 0.0 0.0 11.521218616742297 0.0 26 4.5606914008163637E-4 0.0 0.0 11.748797117643035 0.0 27 4.5606914008163637E-4 0.0 0.0 12.004651905228833 0.0 28 4.5606914008163637E-4 0.0 0.0 12.254577793993569 0.0 29 4.5606914008163637E-4 0.0 0.0 12.528675347182633 0.0 30 4.5606914008163637E-4 0.0 0.0 12.862061888582309 0.0 31 4.5606914008163637E-4 0.0 0.0 13.16580393587668 0.0 32 4.5606914008163637E-4 0.0 0.0 13.42257086174264 0.0 33 4.5606914008163637E-4 0.0 0.0 13.718559733655622 0.0 34 4.5606914008163637E-4 0.0 0.0 14.013180398148359 0.0 35 4.5606914008163637E-4 0.0 0.0 14.290014366177912 0.0 36 4.5606914008163637E-4 0.0 0.0 14.5709529564682 0.0 37 4.5606914008163637E-4 0.0 0.0 14.875151072902652 0.0 38 4.5606914008163637E-4 0.0 0.0 15.209449752582492 0.0 39 4.5606914008163637E-4 0.0 0.0 15.654573233302168 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATACGG 30 2.1574415E-6 45.000004 2 CGGGTAT 40 6.7720975E-9 45.0 6 TTAGGCA 20 7.0207904E-4 45.0 5 ATCAGTA 20 7.0207904E-4 45.0 34 CTAAGCG 20 7.0207904E-4 45.0 2 TACGGGC 25 3.88045E-5 45.0 4 ACCACCT 20 7.0207904E-4 45.0 14 CGAGATA 25 3.88045E-5 45.0 19 CGCCGCA 20 7.0207904E-4 45.0 18 CGTTTTA 225 0.0 45.0 1 CGTTTTT 1445 0.0 42.664356 1 ACGGGCT 55 6.002665E-11 40.909092 5 AGGCGAT 50 1.0732037E-9 40.5 7 ATACGGG 85 0.0 39.705883 3 AGCGCAA 40 3.4411823E-7 39.375 43 AACGGGT 35 6.2251875E-6 38.57143 4 ACGCCGG 65 9.094947E-12 38.07692 27 GTAGGGT 65 9.094947E-12 38.07692 4 GGCGATC 30 1.13691116E-4 37.500004 8 ACTCATG 30 1.13691116E-4 37.500004 22 >>END_MODULE