SRR2936301.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936301.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	128624
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTC	1133	0.8808620475183481	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCG	1080	0.8396566737156363	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGC	1033	0.8031160592113448	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	370	0.28766015673591244	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCT	270	0.2099141684289091	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCG	257	0.1998071899489986	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGC	256	0.19902973006592858	No Hit
GAATCTATCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTC	247	0.1920325911182983	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	236	0.1834805324045279	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	208	0.161711655678567	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTC	192	0.14927229754944643	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCT	172	0.1337230998880458	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGGGT	35	1.2007149E-7	45.000004	4
GCTCTCG	20	7.0099137E-4	45.000004	9
CTACGGG	20	7.0099137E-4	45.000004	3
CTACGAA	35	1.2007149E-7	45.000004	11
TACGAAT	35	1.2007149E-7	45.000004	12
CGGGCAA	20	7.0099137E-4	45.000004	6
CGAATAT	35	1.2007149E-7	45.000004	14
GGTTGTA	20	7.0099137E-4	45.000004	8
ACGTAAG	20	7.0099137E-4	45.000004	1
GCTACGA	35	1.2007149E-7	45.000004	10
CCTATGC	20	7.0099137E-4	45.000004	35
CGTTTTA	35	1.2007149E-7	45.000004	1
TATCGGG	20	7.0099137E-4	45.000004	3
GACCTAT	20	7.0099137E-4	45.000004	33
GTTGATC	55	1.8189894E-12	45.0	16
CATATGC	55	1.8189894E-12	45.0	33
CTATCTC	25	3.8714465E-5	45.0	5
GGGTCTC	25	3.8714465E-5	45.0	7
GCGCGAC	25	3.8714465E-5	45.0	9
TAGCATA	55	1.8189894E-12	45.0	30