##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936301.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 128624 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.98713303893519 33.0 31.0 34.0 30.0 34.0 2 32.10347991043662 33.0 31.0 34.0 30.0 34.0 3 31.971086266948625 33.0 31.0 34.0 30.0 34.0 4 35.73272484139818 37.0 35.0 37.0 35.0 37.0 5 35.81946604055231 37.0 35.0 37.0 35.0 37.0 6 35.774474437119046 37.0 35.0 37.0 35.0 37.0 7 26.707783928349297 35.0 10.0 37.0 0.0 37.0 8 31.01621781316084 35.0 19.0 37.0 17.0 37.0 9 35.82916873989302 39.0 32.0 39.0 32.0 39.0 10 36.67534052742879 38.0 35.0 39.0 33.0 39.0 11 37.03095845254385 39.0 37.0 39.0 34.0 39.0 12 37.02364255504416 39.0 37.0 39.0 33.0 39.0 13 36.897616307998504 39.0 37.0 39.0 33.0 39.0 14 38.17274381141933 40.0 37.0 41.0 33.0 41.0 15 38.23025251897002 40.0 37.0 41.0 33.0 41.0 16 38.18913266575445 40.0 37.0 41.0 33.0 41.0 17 38.03885744495584 40.0 37.0 41.0 33.0 41.0 18 37.94548451299913 40.0 37.0 41.0 33.0 41.0 19 37.80166220923 40.0 36.0 41.0 33.0 41.0 20 37.8845472073641 40.0 36.0 41.0 33.0 41.0 21 37.86726427416345 40.0 36.0 41.0 33.0 41.0 22 37.849545963428284 40.0 36.0 41.0 33.0 41.0 23 37.81747574325165 40.0 36.0 41.0 33.0 41.0 24 37.726435190944144 40.0 36.0 41.0 33.0 41.0 25 37.62378716258241 40.0 36.0 41.0 33.0 41.0 26 37.46161680557283 39.0 35.0 41.0 33.0 41.0 27 37.360158290832196 39.0 35.0 41.0 32.0 41.0 28 37.33991323547705 39.0 35.0 41.0 32.0 41.0 29 37.30657575569101 39.0 35.0 41.0 32.0 41.0 30 37.22264118671477 39.0 35.0 41.0 32.0 41.0 31 37.08731651946759 39.0 35.0 41.0 32.0 41.0 32 36.9272686279388 39.0 35.0 41.0 31.0 41.0 33 36.79311792511506 39.0 35.0 41.0 31.0 41.0 34 36.640168242318694 39.0 35.0 41.0 30.0 41.0 35 36.53419268565742 39.0 35.0 41.0 30.0 41.0 36 36.35012128374176 39.0 35.0 41.0 30.0 41.0 37 36.159402599825846 39.0 35.0 41.0 30.0 41.0 38 36.119363415847744 39.0 35.0 40.0 30.0 41.0 39 36.057376539370566 39.0 35.0 40.0 29.0 41.0 40 35.80967004602562 38.0 35.0 40.0 28.0 41.0 41 35.75948501057346 38.0 35.0 40.0 28.0 41.0 42 35.68476334121159 38.0 35.0 40.0 28.0 41.0 43 35.67764180868267 38.0 35.0 40.0 28.0 41.0 44 35.4401589128001 38.0 34.0 40.0 27.0 41.0 45 35.39047922627192 38.0 34.0 40.0 27.0 41.0 46 35.24654807811917 38.0 34.0 40.0 26.0 41.0 47 35.0258816395074 38.0 34.0 40.0 25.0 41.0 48 34.968862731683046 38.0 34.0 40.0 25.0 41.0 49 34.795769063316335 37.0 34.0 40.0 24.0 41.0 50 34.575444707053116 37.0 34.0 40.0 24.0 41.0 51 32.44661960442841 35.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 4.0 10 9.0 11 5.0 12 7.0 13 5.0 14 4.0 15 14.0 16 16.0 17 31.0 18 85.0 19 97.0 20 184.0 21 283.0 22 428.0 23 548.0 24 857.0 25 1121.0 26 1367.0 27 1597.0 28 1798.0 29 2186.0 30 2652.0 31 3474.0 32 4503.0 33 6104.0 34 9470.0 35 11487.0 36 12234.0 37 18707.0 38 23586.0 39 25749.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.986938673964424 19.641746485881328 22.988711282497825 12.382603557656426 2 30.619480034830204 28.67660778703819 23.904559024754324 16.799353153377286 3 31.642617240950365 27.296616494588875 25.46492101007588 15.595845254384875 4 28.423155865157355 24.11913795248165 29.487498445080234 17.970207737280756 5 27.50342082348551 29.380986441099637 23.291920636895135 19.823672098519715 6 25.27522079860679 36.921569846995894 24.322832441846 13.480376912551312 7 58.51785047891529 28.298762283866154 8.798513496703569 4.38487374051499 8 77.68923373553925 8.701331011319816 9.310082099763651 4.299353153377286 9 71.59705809180247 8.482864784177137 10.627099141684289 9.292977982336112 10 42.757183729319564 25.66472820002488 17.707426296803085 13.870661773852468 11 33.05526184848862 26.18018410250031 23.40309740017415 17.36145664883692 12 32.40997014554049 21.673249160343328 26.449962681925616 19.466818012190572 13 25.27211095907451 25.017881577310614 28.932392088568232 20.777615375046647 14 20.718528423933325 28.857755939793506 26.74850727702451 23.67520835924866 15 19.42172533897251 26.16541236472198 34.33962557532031 20.073236720985197 16 21.916594103744245 25.31331633287722 30.864379897997264 21.905709665381266 17 22.033213086204753 25.110399303395948 28.864753078741135 23.991634531658164 18 22.386179873118547 27.86338474934693 27.369697723597465 22.380737653937057 19 25.670170419206368 27.76931210349546 24.83440104490608 21.72611643239209 20 27.592828710038564 25.876974748103 27.75609528548327 18.774101256375168 21 25.65773106107725 28.54366214703321 26.353557656424933 19.445049135464608 22 23.899894265455902 24.98367334245553 25.971824853837543 25.144607538251023 23 23.82137081726583 27.917029481278767 27.449776091553673 20.81182360990173 24 24.209323298917777 24.170450304764273 28.274661027490982 23.345565368826968 25 21.921258863042667 28.79478168926483 25.488244806567984 23.79571464112452 26 21.143021520089565 28.193027739768628 26.721296181117054 23.942654559024753 27 23.762283866152504 29.25581539992536 25.493687025749473 21.48821370817266 28 20.531160592113448 27.55473317576813 29.261257619106857 22.65284861301157 29 23.42953103619853 25.572987933822617 27.325382510262468 23.672098519716382 30 22.21202885931086 27.660467719865657 29.312569971389475 20.814933449434008 31 24.05072148277149 26.42197412613509 26.334898619231247 23.19240577186217 32 27.178442592362234 27.72110959074512 24.612824978231124 20.487622838661526 33 24.27385246921259 28.608968777211096 24.77609155367583 22.341087199900485 34 23.592797611643242 28.42004602562508 26.095440975245676 21.891715387486006 35 25.102624704565248 25.066084090060954 26.620226396317946 23.211064809055852 36 24.268410250031096 28.63384749346934 25.582317452419456 21.515424804080112 37 24.35082099763652 27.80507525811668 28.251337230998878 19.592766513247916 38 23.57802587386491 28.320531160592115 25.592424430899364 22.509018534643612 39 25.45170419206369 27.317607911431768 25.803116059211344 21.427571837293197 40 25.227795745739517 26.316239582037564 27.627036944893646 20.82892772732927 41 21.167122776464733 28.70381888294564 27.11780072148277 23.011257619106853 42 23.62467346684911 25.70982087324294 28.262999129244932 22.40250653066302 43 25.88319442716756 25.1764833934569 26.295248165194675 22.645074014180867 44 22.400174151013807 27.086702326159973 27.388356760791144 23.12476676203508 45 21.879276029356884 26.557252145789278 25.685719616867768 25.877752207986067 46 24.160343326284366 29.20683542729195 24.794750590869512 21.838070655554173 47 21.96090931707924 26.207395198407763 29.999067048140315 21.832628436372683 48 23.211064809055852 25.00544221918149 27.963677074262964 23.819815897499687 49 21.367707426296803 25.263558900360746 29.992847369075754 23.3758863042667 50 20.248942654559023 26.256375171041174 28.542884687150146 24.951797487249657 51 21.56518223659659 24.98056350292325 26.39787286975992 27.05638139072024 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 111.0 1 220.5 2 330.0 3 619.0 4 908.0 5 685.5 6 463.0 7 399.5 8 336.0 9 314.0 10 292.0 11 294.0 12 296.0 13 314.0 14 332.0 15 332.0 16 332.0 17 354.5 18 377.0 19 397.0 20 417.0 21 482.0 22 547.0 23 604.0 24 661.0 25 831.0 26 1176.0 27 1351.0 28 1705.0 29 2059.0 30 2292.0 31 2525.0 32 2783.5 33 3042.0 34 3557.5 35 4073.0 36 4040.5 37 4008.0 38 4317.0 39 4626.0 40 5213.5 41 5801.0 42 6548.5 43 7296.0 44 7859.0 45 8422.0 46 11052.0 47 13682.0 48 11362.0 49 9042.0 50 8626.5 51 8211.0 52 7477.5 53 6744.0 54 6341.5 55 5939.0 56 5845.5 57 5752.0 58 6056.5 59 6361.0 60 6354.0 61 6347.0 62 5675.0 63 5003.0 64 4295.5 65 3588.0 66 3064.5 67 2541.0 68 2156.0 69 1771.0 70 1550.0 71 1329.0 72 1136.0 73 943.0 74 839.0 75 573.5 76 412.0 77 325.0 78 238.0 79 212.5 80 187.0 81 140.0 82 93.0 83 73.0 84 53.0 85 40.5 86 28.0 87 18.0 88 8.0 89 5.0 90 2.0 91 4.0 92 6.0 93 3.5 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 128624.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.09208234855082 #Duplication Level Percentage of deduplicated Percentage of total 1 67.78163736709396 29.886335365095164 2 10.482605399114842 9.243998009702699 3 6.093840918307972 8.060704067670109 4 4.023768800804048 7.096653812663267 5 2.8917532135489217 6.3751710411742755 6 2.1811577592439124 5.770307252145789 7 1.685680531800469 5.2027615375046645 8 1.2483910214589249 4.40353277770867 9 1.0050605681237106 3.988369200149272 >10 2.5461534392467335 14.515953476800597 >50 0.03702854724666302 1.1296492101007587 >100 0.01763264154603001 1.802929468839408 >500 0.0 0.0 >1k 0.005289792463809003 2.523634780445329 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTC 1133 0.8808620475183481 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCG 1080 0.8396566737156363 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGC 1033 0.8031160592113448 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 370 0.28766015673591244 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCT 270 0.2099141684289091 No Hit GAATGAAACCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCG 257 0.1998071899489986 No Hit GAATGAAACGGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGC 256 0.19902973006592858 No Hit GAATCTATCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTC 247 0.1920325911182983 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 236 0.1834805324045279 No Hit GCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC 208 0.161711655678567 Illumina Single End Adapter 1 (95% over 21bp) GAATGATCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTC 192 0.14927229754944643 No Hit GAACTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCT 172 0.1337230998880458 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08863042666998383 0.0 2 0.0 0.0 0.0 0.49912924493096156 0.0 3 0.0 0.0 0.0 0.6033088692623461 0.0 4 0.0 0.0 0.0 0.9189575817887797 0.0 5 0.0 0.0 0.0 2.346373927105361 0.0 6 0.0 0.0 0.0 2.662800099514865 0.0 7 0.0 0.0 0.0 3.148712526433636 0.0 8 0.0 0.0 0.0 3.8002239084463243 0.0 9 0.0 0.0 0.0 3.9969212588630425 0.0 10 0.0 0.0 0.0 5.519187709914169 0.0 11 0.0 0.0 0.0 6.149707675083966 0.0 12 0.0 0.0 0.0 7.769934071401916 0.0 13 0.0 0.0 0.0 8.059149147903968 0.0 14 0.0 0.0 0.0 8.185875108844384 0.0 15 0.0 0.0 0.0 8.475090185346437 0.0 16 0.0 0.0 0.0 8.844383629804701 0.0 17 0.0 0.0 0.0 9.216786913795248 0.0 18 0.0 0.0 0.0 9.670046025625078 0.0 19 0.0 0.0 0.0 9.92738524692126 0.0 20 0.0 0.0 0.0 10.18705684786665 0.0 21 0.0 0.0 0.0 10.516699838288345 0.0 22 0.0 0.0 0.0 10.859559646722229 0.0 23 0.0 0.0 0.0 11.231185470829706 0.0 24 0.0 0.0 0.0 11.498631670605796 0.0 25 0.0 0.0 0.0 11.731092175643736 0.0 26 0.0 0.0 0.0 11.957333001617117 0.0 27 0.0 0.0 0.0 12.178909068292077 0.0 28 0.0 0.0 0.0 12.402817514616245 0.0 29 0.0 0.0 0.0 12.675705933573827 0.0 30 0.0 0.0 0.0 12.94703943276527 0.0 31 0.0 0.0 0.0 13.240141808682672 0.0 32 0.0 0.0 0.0 13.498258489861923 0.0 33 0.0 0.0 0.0 13.748600572210474 0.0 34 0.0 0.0 0.0 14.012159472571215 0.0 35 0.0 0.0 0.0 14.274940913048887 0.0 36 0.0 0.0 0.0 14.557158850603308 0.0 37 0.0 0.0 0.0 14.826159970145541 0.0 38 0.0 0.0 0.0 15.112265207115312 0.0 39 0.0 0.0 0.0 15.454347555666128 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATGGGT 35 1.2007149E-7 45.000004 4 GCTCTCG 20 7.0099137E-4 45.000004 9 CTACGGG 20 7.0099137E-4 45.000004 3 CTACGAA 35 1.2007149E-7 45.000004 11 TACGAAT 35 1.2007149E-7 45.000004 12 CGGGCAA 20 7.0099137E-4 45.000004 6 CGAATAT 35 1.2007149E-7 45.000004 14 GGTTGTA 20 7.0099137E-4 45.000004 8 ACGTAAG 20 7.0099137E-4 45.000004 1 GCTACGA 35 1.2007149E-7 45.000004 10 CCTATGC 20 7.0099137E-4 45.000004 35 CGTTTTA 35 1.2007149E-7 45.000004 1 TATCGGG 20 7.0099137E-4 45.000004 3 GACCTAT 20 7.0099137E-4 45.000004 33 GTTGATC 55 1.8189894E-12 45.0 16 CATATGC 55 1.8189894E-12 45.0 33 CTATCTC 25 3.8714465E-5 45.0 5 GGGTCTC 25 3.8714465E-5 45.0 7 GCGCGAC 25 3.8714465E-5 45.0 9 TAGCATA 55 1.8189894E-12 45.0 30 >>END_MODULE