SRR2936296.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936296.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	556515
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCG	1133	0.20358840282831547	No Hit
GAATCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTC	1039	0.18669757329092657	TruSeq Adapter, Index 13 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGC	897	0.16118163930891352	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	782	0.14051732657700153	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	777	0.13961887819735316	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGACGGT	25	3.8882026E-5	45.000004	16
GCTACGC	20	7.0301467E-4	45.0	42
CAGTACG	20	7.0301467E-4	45.0	1
TAATGCG	20	7.0301467E-4	45.0	1
ACGGGTA	65	0.0	41.538464	5
AACACGT	60	3.6379788E-12	41.249996	41
ATAACGG	50	1.0786607E-9	40.500004	2
GTATGCG	45	1.9252184E-8	40.0	1
ATTGGGC	130	0.0	39.807693	4
TAACGGG	200	0.0	39.375004	3
TACGGGT	40	3.4539335E-7	39.375	4
GACCGCC	35	6.2424824E-6	38.571426	9
TCTACGG	35	6.2424824E-6	38.571426	2
TGCACGG	155	0.0	37.741936	2
TATGCGG	90	0.0	37.5	2
ACGCGAG	30	1.13916554E-4	37.499996	2
GCGACAA	30	1.13916554E-4	37.499996	18
GTTTCGC	30	1.13916554E-4	37.499996	16
GATATAC	30	1.13916554E-4	37.499996	9
TTGCGAG	60	1.546141E-10	37.499996	1