SRR2936293.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936293.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	288556
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TGGGAATGAAATATTCTGGGGAAAGAGTTATAAATCTTTATTGACTTTGTT	1059	0.36699981979234536	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1013	0.35105837341798474	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCG	504	0.17466280375386406	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTC	479	0.1659989742025811	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGC	472	0.16357310192822191	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	349	0.12094706053590984	No Hit
GCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC	299	0.10361940143334397	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCACCGA	35	1.2076998E-7	45.000004	9
TACGAAT	35	1.2076998E-7	45.000004	12
ACGAATG	35	1.2076998E-7	45.000004	1
TGATCGT	20	7.0244964E-4	45.0	28
ACTGCGG	20	7.0244964E-4	45.0	2
TTGCTCG	20	7.0244964E-4	45.0	1
CACGCCA	25	3.8835216E-5	45.0	27
AGGCGAT	50	2.1827873E-11	45.0	7
GCACCTC	20	7.0244964E-4	45.0	25
ATCGTGA	20	7.0244964E-4	45.0	30
GTTGTCG	20	7.0244964E-4	45.0	37
GGGCGTA	20	7.0244964E-4	45.0	7
CGTAGCG	20	7.0244964E-4	45.0	2
TGCGAAG	25	3.8835216E-5	45.0	1
TGTTCGT	20	7.0244964E-4	45.0	10
GCGGGTT	25	3.8835216E-5	45.0	5
CCGAGGA	20	7.0244964E-4	45.0	4
GATGCCG	20	7.0244964E-4	45.0	43
CCAAGCG	25	3.8835216E-5	45.0	20
GCGGCTA	20	7.0244964E-4	45.0	24