SRR2936291.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936291.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	264820
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCG	516	0.19484933162147874	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGC	414	0.15633260327769807	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTC	392	0.14802507363492184	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	326	0.12310248470659316	No Hit
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	314	0.1185711049014425	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTCAC	20	7.0234435E-4	45.000004	10
ATAATCG	20	7.0234435E-4	45.000004	22
TACGAGC	20	7.0234435E-4	45.000004	28
CGCACTG	20	7.0234435E-4	45.000004	3
ACGAGCC	20	7.0234435E-4	45.000004	29
GTAACGG	20	7.0234435E-4	45.000004	2
ATCGCAC	20	7.0234435E-4	45.000004	25
AGTCGTT	20	7.0234435E-4	45.000004	37
TAATCGC	20	7.0234435E-4	45.000004	23
TCAGACG	25	3.8826496E-5	45.0	22
TTTGACG	25	3.8826496E-5	45.0	1
ATCATCG	25	3.8826496E-5	45.0	42
TTCGAAG	25	3.8826496E-5	45.0	1
TAGTATG	25	3.8826496E-5	45.0	32
TACGGGC	30	2.1591532E-6	44.999996	4
AGGCGAT	60	0.0	44.999996	7
CGAATAT	30	2.1591532E-6	44.999996	14
CATACGA	100	0.0	42.75	18
ATGGGCG	70	0.0	41.785713	5
AATGGGC	60	3.6379788E-12	41.249996	4