SRR2936290.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936290.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	633592
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4124	0.6508920567178879	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTC	2643	0.4171454185027589	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCG	2015	0.31802800540410864	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1427	0.22522380333085015	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGC	1409	0.22238285836942384	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	833	0.13147261960378287	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCT	705	0.11127034432252933	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	688	0.10858722963673784	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTT	638	0.10069571585499817	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGAAT	25	3.888816E-5	45.000004	13
GGATCGA	55	1.8189894E-12	45.000004	8
TTACGCG	25	3.888816E-5	45.000004	1
TCGAATG	25	3.888816E-5	45.000004	11
TAGTACG	45	3.8380676E-10	45.000004	1
CTCCGAA	35	1.2107739E-7	45.0	20
TAACGCG	20	7.0308876E-4	45.0	1
TCTAGCG	40	6.8066583E-9	45.0	1
AGTGCGA	20	7.0308876E-4	45.0	1
ATCGAAT	20	7.0308876E-4	45.0	10
CGAATAT	65	0.0	44.999996	14
CGTTATT	475	0.0	43.578945	1
GTTACGG	80	0.0	42.1875	2
CGGTTTT	580	0.0	41.89655	1
CGTTTTT	1830	0.0	41.434425	1
TACGCGG	60	3.6379788E-12	41.249996	2
TTGCACG	45	1.925946E-8	40.000004	1
CGTTTTA	250	0.0	39.6	1
GGCGATA	205	0.0	39.512196	8
GTTTACG	40	3.454952E-7	39.375	1