SRR2936288.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936288.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	168661
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCG	546	0.3237262911995067	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGC	394	0.23360468632345355	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTC	342	0.2027736109711196	No Hit
GCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGC	327	0.19388003154256173	TruSeq Adapter, Index 21 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	185	0.10968747961888048	No Hit
CTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGCT	178	0.10553714255222013	Illumina Paired End PCR Primer 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGC	169	0.1002009948950854	TruSeq Adapter, Index 21 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGCACG	25	3.876615E-5	45.000004	1
GATAAGA	30	2.1544602E-6	45.000004	9
ACCTAAC	30	2.1544602E-6	45.000004	38
TCAGCTA	25	3.876615E-5	45.000004	40
AATGACG	30	2.1544602E-6	45.000004	1
TACTGAT	25	3.876615E-5	45.000004	17
GCGGGTA	25	3.876615E-5	45.000004	5
GGTATAT	25	3.876615E-5	45.000004	8
TTAACGG	25	3.876615E-5	45.000004	2
AACTACG	30	2.1544602E-6	45.000004	1
TAGCTGG	25	3.876615E-5	45.000004	2
CTTAAGC	20	7.0161594E-4	45.0	22
CGGGTAA	20	7.0161594E-4	45.0	6
CGTGGCC	20	7.0161594E-4	45.0	19
CAAAACG	20	7.0161594E-4	45.0	32
GCGAATG	20	7.0161594E-4	45.0	1
TGGGTAC	35	1.203698E-7	45.0	6
ATTACGG	20	7.0161594E-4	45.0	2
GGGAGTA	20	7.0161594E-4	45.0	7
TAACGGG	45	3.8016879E-10	45.0	3