FastQCFastQC Report
Sat 14 Jan 2017
SRR2936287.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936287.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557770
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11000.19721390537318248No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT6640.11904548469799378No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTAACG207.0301595E-445.0000041
CTATGCG207.0301595E-445.0000041
AAGTACG253.8882135E-545.0000041
ACGGGCC650.045.0000045
ATACGTG207.0301595E-445.00000411
TAATGCG207.0301595E-445.0000041
CCGCATG207.0301595E-445.0000041
GTACGAT207.0301595E-445.00000413
CTTACGG253.8882135E-545.0000042
TAGCACG302.1634842E-644.9999961
TACGAAT1650.042.27272812
CGAATAT1700.041.0294114
CGGGTAG451.9252184E-840.06
ACCGGGT451.9252184E-840.04
TATGGGC1650.039.5454524
AACGGGC1150.039.1304324
CTACGAA1800.038.7511
CTAGACG356.242506E-638.5714261
GCGATAT356.242506E-638.5714269
GGCCTAT659.094947E-1238.0769278
Produced by FastQC (version 0.11.5)