SRR2936286.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936286.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	397499
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCG	534	0.13433996060367448	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	491	0.12352232332659957	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	470	0.1182392911680281	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGC	419	0.1054090702114974	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTC	414	0.10415120541183752	RNA PCR Primer, Index 27 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCGG	30	2.1619053E-6	45.000004	2
GGCAACC	30	2.1619053E-6	45.000004	8
TAGGCGA	35	1.209246E-7	45.000004	6
CACGTGA	35	1.209246E-7	45.000004	43
GACTATA	35	1.209246E-7	45.000004	9
AACACGG	30	2.1619053E-6	45.000004	2
TCGTTAT	20	7.0277124E-4	45.0	42
TCACCCG	20	7.0277124E-4	45.0	39
CTCAACG	20	7.0277124E-4	45.0	25
CACGGGC	25	3.886185E-5	45.0	4
CGAAACG	20	7.0277124E-4	45.0	26
GCGAACG	20	7.0277124E-4	45.0	1
TCCGACA	25	3.886185E-5	45.0	13
GACAATC	20	7.0277124E-4	45.0	20
ATATGCG	20	7.0277124E-4	45.0	1
CCATGCG	20	7.0277124E-4	45.0	30
CGTTATG	20	7.0277124E-4	45.0	43
CTAACGG	25	3.886185E-5	45.0	2
GTTAACG	20	7.0277124E-4	45.0	1
CGCTAAG	20	7.0277124E-4	45.0	2