SRR2936285.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936285.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	279396
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCG	2022	0.7237039900356483	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTC	1674	0.5991495941244684	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGC	1581	0.565863505561998	No Hit
GCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTGC	766	0.27416283697690735	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCT	516	0.18468410428209422	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCG	388	0.1388709931423499	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTC	353	0.1263439705650761	No Hit
CTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTGCT	343	0.12276482125728357	TruSeq Adapter, Index 16 (95% over 23bp)
GAATATGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTC	318	0.11381694798780226	No Hit
CCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTGC	317	0.113459033057023	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGAAACCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCG	313	0.112027373333906	No Hit
GAACTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCT	311	0.1113115434723475	No Hit
GAATCTATCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTC	296	0.1059428195106587	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAG	20	7.024109E-4	45.000004	39
AAGTACG	20	7.024109E-4	45.000004	1
TCGTTAT	20	7.024109E-4	45.000004	21
ATAGGCG	20	7.024109E-4	45.000004	14
CTCCGAA	20	7.024109E-4	45.000004	36
TTTACGG	20	7.024109E-4	45.000004	2
CACGGAC	20	7.024109E-4	45.000004	15
TTAGACT	20	7.024109E-4	45.000004	27
GCACGGT	20	7.024109E-4	45.000004	3
CGTTATG	20	7.024109E-4	45.000004	22
TTGAGCG	20	7.024109E-4	45.000004	1
TGTTGCG	20	7.024109E-4	45.000004	13
TGGCACG	20	7.024109E-4	45.000004	1
CCGTATG	20	7.024109E-4	45.000004	39
GCCGAAT	20	7.024109E-4	45.000004	22
CGCTCAT	20	7.024109E-4	45.000004	11
AACGCGT	20	7.024109E-4	45.000004	31
CCGAGAA	20	7.024109E-4	45.000004	26
ACTCGTC	20	7.024109E-4	45.000004	10
TTCGAGT	20	7.024109E-4	45.000004	17